Actinosynnema pretiosum: CNX65_05920
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Entry
CNX65_05920 CDS
T05092
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
apre
Actinosynnema pretiosum
Pathway
apre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CNX65_05920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apre03019
]
CNX65_05920
03009 Ribosome biogenesis [BR:
apre03009
]
CNX65_05920
Enzymes [BR:
apre01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CNX65_05920
Messenger RNA biogenesis [BR:
apre03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CNX65_05920
Ribosome biogenesis [BR:
apre03009
]
Prokaryotic type
rRNA processing factors
CNX65_05920
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
DnaJ_CXXCXGXG
RD3
Motif
Other DBs
NCBI-ProteinID:
ATE52874
UniProt:
A0A290Z1J5
LinkDB
All DBs
Position
1307716..1310631
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AA seq
971 aa
AA seq
DB search
MSNTDKPAGPAGGGSATPGHPALADLPAKLRVHALAKLLGTTSKDVLAALADLGETVRSA
QSSVTRDLAIKVGESLLNWDDIVTGDVDELTVTEVEAAVPAREVAALTPLFAPPSAMFLP
PTPVATTAVPVTRAEPEDEDDEADDQHADASDDADGDGDGRRRRRRGRRGRGRGKGVEDN
QDESAEEVDQAPAAEAEPEADEPAADASDDEEEGGGSRRRRRRRRRKSGADDESAPNEDD
PPNTVVHVRETRDARDDRADSEAAQNEVRSVRGSTRLEAKRQRRRDGREAGRRRAPVLSE
AEFLARREAVERTMVVRERGDRTQIGVLEDGVLVEHFVTSAGSGSLVGNVYLGRVQNVLP
SMEAAFIDIGRGRNAVLYAGEVDWDAAGLEGKARKIEQALSSGDSVLVQVTKDPVGHKGA
RLTTQISLPGRFLVYVPGGGATGISRKLPDNERKRLKDILKRVVPDDAGVIIRTASEGVA
EEELARDVTRLQAQWQIIKDKAATPKAQAPQLLYEEPDLLVKVVRDLFTEDFSGLVVQGS
EAWDTIDGYVRHVAPDLQDRLHRHVGNSDAFGEYRIDEQLMKALDRKVWLPSGGYLVIDR
TEAMTVIDVNTGKFTGSGGNLEETVTRNNLEAAEEIVRQLRLRDVGGIIVIDFIDMVLES
NRDLVLRRLTECLGRDRTRHQVAEVTSLGLVQMTRKRVGTGLLEAFSSTCEHCRGRGLVV
TTDPTAHSHGGGSHGGGSNGGSTGGNQQSSGGGRKSRRNKGGDSGEQQAEAQAAPVEQVP
ATEPEAPVEHPDAQDHDLEPEVQERRPGGRRAARQAAREAAKEAAKQEAAERAAAKREAE
EQAPAAEVAAEPSVPAAAEPEAPAVVAEAVAPEVFAEAPAEPAAEDAEAPAKRGGRQRRR
AVRREAGAAVTREAAPAPVVVVAPQPEPVAVEPSANGHVPEVKAESLVTTTTRRRVSRRA
ATRPAGPPKES
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaacacggacaagcccgccggccccgccggcgggggtagcgccacacccggacac
ccggcgctcgccgacctgcccgccaagctgcgggtgcacgccctggcgaagctgctcggc
acgaccagcaaggacgtgctggccgcgctcgccgatctcggcgagacggtgcgcagcgcc
cagtcgagcgtcaccagggacctcgcgatcaaggtcggcgagagcctgctgaactgggac
gacatcgtcaccggcgacgtcgacgagctgaccgtcaccgaggtggaggcggctgtgccc
gcccgcgaggtggcggcgctcacaccgctgttcgccccgccgtcggcgatgttcctgccg
ccgacgccggtcgcgaccaccgcggtgcccgtcaccagggcggagcccgaggacgaggac
gacgaggccgacgaccagcacgccgacgcgtccgacgacgccgacggcgatggcgacggc
cgccgccgccgccgccgcggccgtcgcggtcgcggtcgcggcaagggcgtcgaggacaac
caggacgagtccgccgaggaggtcgaccaggccccggccgccgaggccgagcccgaggcc
gacgagcccgccgccgacgcgtccgacgacgaggaggagggcggcggcagccgtcgccgc
cgtcgccgccgccgtcgcaagtccggcgccgacgacgagtccgcgccgaacgaggacgac
ccgccgaacacggtcgtgcacgtccgcgagacccgcgacgcgcgcgacgaccgggcggac
tccgaggccgcgcagaacgaggtgcgcagcgtccggggctccacccgcctggaggccaag
cgccagcgccgcagggacggccgcgaggccggtcgccgccgcgcgcccgtgctctccgag
gccgagttcctggcccgccgcgaggccgtcgagcgcaccatggtcgtgcgcgagcgcggc
gaccgcacccagatcggcgtgctggaggacggcgtcctcgtcgagcacttcgtgacgtcc
gcgggctccggctcgctggtcggcaacgtctacctcggccgggtgcagaacgtgctgccc
agcatggaggcggcgttcatcgacatcggccgcggtcgcaacgcggtgctctacgcgggc
gaggtcgactgggacgcggcaggccttgagggcaaggcccgcaagatcgagcaggccctg
tccagcggcgacagcgtcctggtgcaggtcaccaaggacccggtcggccacaagggcgcc
cgcctgaccacccagatcagcctgcccggccgcttcctggtgtacgtgcccggcggcggc
gcgaccggcatcagccgcaagctgccggacaacgagcgcaagcgcctcaaggacatcctc
aagcgcgtcgtccccgacgacgcgggcgtgatcatccgcaccgcgtcggagggcgtcgcc
gaggaggagctggcgcgcgacgtcacccgcctgcaggcgcagtggcagatcatcaaggac
aaggccgccacgcccaaggcccaggccccgcagctgctctacgaggagccggacctgctg
gtcaaggtcgtgcgcgacctgttcaccgaggacttctcgggcctggtcgtccagggctcc
gaggcctgggacacgatcgacggctacgtgcggcacgtcgcgccggacctgcaggaccgg
ctgcaccggcacgtcggcaactccgacgcgttcggcgagtaccggatcgacgagcagctg
atgaaggcgctggaccgcaaggtctggctgccctccggcggctacctcgtgatcgaccgc
accgaggccatgacggtcatcgacgtcaacaccgggaagttcaccggatccggtggcaac
ctggaggagacggtcaccaggaacaacctggaggcggccgaggagatcgtccggcagctc
aggctgcgcgacgtcggcggcatcatcgtcatcgacttcatcgacatggtgctggagtcc
aaccgggacctggtgctgcgcaggctcaccgagtgcctcggccgggaccggaccaggcac
caggtcgccgaggtgacctcgctggggctcgtgcagatgacccgcaagcgggtcggcacc
gggctgcttgaggcgttcagcagcacgtgcgagcactgccggggtcgcgggctggtcgtc
acgaccgacccgaccgcgcactcgcacggcggcggctcccacggcggcggctcgaacggc
ggctccaccgggggcaaccagcagtcgtccggcggtggtcggaagtcgcggcgcaacaag
ggcggcgactcgggcgagcagcaggccgaggcgcaggccgccccggtcgagcaggtcccc
gcgaccgagcccgaggcgcccgtcgagcacccggacgcccaggaccacgacctggagccc
gaggtgcaggagcgccgtccgggtggccgcagggccgccaggcaggccgcccgcgaggcc
gcgaaggaagcggccaagcaggaggccgccgagcgcgccgccgcgaagcgcgaggccgag
gagcaggccccggccgccgaggtcgcggccgagccgtcggtcccggccgccgctgagccc
gaggccccggccgtcgtggcggaggccgtggcgcccgaggtgttcgccgaggccccggcc
gagcccgcggcggaggacgccgaggcgcccgccaagcggggtggccgccagcggcgccgc
gcggtgcggcgcgaggcgggcgcggcggtgaccagggaggccgcaccggcccccgtggtc
gtggtggccccgcagcccgagccggtcgcggtggagccctccgccaacggccacgtgccc
gaggtgaaggcggagtccctggtgaccaccacgacccgccgcagggtctcccggcgcgcg
gcgacccgcccggcgggcccgccgaaggagagctga
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