Actinosynnema pretiosum: CNX65_07325
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Entry
CNX65_07325 CDS
T05092
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
apre
Actinosynnema pretiosum
Brite
KEGG Orthology (KO) [BR:
apre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
apre03016
]
CNX65_07325
Enzymes [BR:
apre01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
CNX65_07325
Transfer RNA biogenesis [BR:
apre03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
CNX65_07325
Prokaryotic type
tRNA splicing ligases
CNX65_07325
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ATE53120
UniProt:
A0A290Z273
LinkDB
All DBs
Position
complement(1607418..1608572)
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AA seq
384 aa
AA seq
DB search
MSPTTLPGARVDIRLWARPDEVEGEALRQLRNIATLPWAVKHVAVMPDVHFGKGATVGSV
IALKDAVSPAAVGVDIGCGMTAVRTSLVAEDLPADLSRLRSLIEAAVPVGFGQHRAPVVF
HDRLWRSFDDLTPTLSQEKALNQMGTLGGGNHFLEVCLDTQSRVWVMLHSGSRGIGNQLA
QHHIAIAKTLAHNDELVDPDLAVFLAGTPEMTAYRHDLYWAQEYARLNRATMLDLVTEVL
LGQFPAIRFDEPISAHHNYVSEERHFGEDVLVTRKGAISARRGELGIIPGSMGTGSYIVR
GLGNPDSFHSASHGAGRRMSRNKARKLFTAEDLAAQTLGVECRKDSGVVDEIPAAYKDLD
SVIEQQADLVEVVTKLKQVLCVKG
NT seq
1155 nt
NT seq
+upstream
nt +downstream
nt
atgtccccgaccacgctccccggagcacgcgtagacatccgcctgtgggcacgtcccgac
gaggtggagggcgaggcgctccggcaactgcggaacatcgccaccctcccgtgggccgtg
aagcacgtggccgtgatgcccgacgtgcacttcggcaagggcgccacggtcggctcggtc
atcgcgctcaaggacgccgtgtccccggccgcggtgggcgtcgacatcggctgcggcatg
accgcggtgcgcacgtcgctggtcgcggaggacctgcccgccgacctgtcgcggctgcgc
tcgctgatcgaggccgccgtgccggtgggcttcggccagcaccgcgcgccggtggtgttc
cacgaccggctgtggcgctcgttcgacgacctgaccccgaccctgtcgcaggagaaggcg
ctgaaccagatgggcaccctgggcggcgggaaccacttcctggaggtctgcctggacacc
cagagccgggtgtgggtgatgctgcactccgggtcgcgcgggatcggcaaccagctggcg
cagcaccacatcgccatcgcgaagacgttggcgcacaacgacgagctggtcgacccggac
ctggcggtgttcctcgcgggcacgccggagatgacggcctaccggcacgacctgtactgg
gcgcaggagtacgcgcggttgaaccgggccacgatgctcgacctggtcacggaggtgctg
ctcgggcagttccccgcgatccggttcgacgagccgatctccgcgcaccacaactacgtg
tcggaggagcgccacttcggcgaggacgtgctggtcacccgcaagggcgcgatcagcgcg
cgccggggcgagctgggcatcatccccggctcgatgggcaccggctcgtacatcgtgcgc
ggcctggggaacccggactcgttccactcggcctcgcacggcgcgggccgccggatgtcg
cggaacaaggcgcgcaagctgttcaccgccgaggacctcgcggcgcagacgctgggcgtg
gagtgccgcaaggactcgggcgtggtcgacgagatcccggccgcgtacaaggacctcgac
agcgtcatcgagcagcaggccgacctcgtggaggtcgtcacgaagctcaagcaggtgctc
tgcgtgaagggctga
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