Actinosynnema pretiosum: CNX65_17830
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Entry
CNX65_17830 CDS
T05092
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
apre
Actinosynnema pretiosum
Brite
KEGG Orthology (KO) [BR:
apre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apre03019
]
CNX65_17830 (hrpA)
Enzymes [BR:
apre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CNX65_17830 (hrpA)
Messenger RNA biogenesis [BR:
apre03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CNX65_17830 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
NACHT
T2SSE
nSTAND3
AAA_30
SLFN-g3_helicase
AAA_16
TsaE
AAA_23
Motif
Other DBs
NCBI-ProteinID:
ATE54913
UniProt:
A0A290Z7G0
LinkDB
All DBs
Position
complement(4139984..4143904)
Genome browser
AA seq
1306 aa
AA seq
DB search
MNTPSFADLQQRLPQLMTRDQRRLRRRLDGVRKMRDERARAGVTAEIAAEFDQAELRVAL
RREALPTITYPAELPVSAHKDEIAALIRDHQVVVVAGETGSGKTTQLPKICLELGRGVLG
QIGHTQPRRLAARTVAERVAEELGTELGAAVGYKVRFTDQSGDDTLVKLMTDGILLAELQ
TDRMLSRYDTIIIDEAHERSLNVDFLLGYLKQLLPQRPDLKVVITSATIDPQRFSRHFSD
APVIEVSGRTYPVEVRYRPLVDPEDPEADPDRDQTQGICDAVRELQAEGPGDVLVFLSGE
REIRDTADALNALKLRDTEVLPLFARLSFAEQHRVFQPHRGRRVVLATNVAETSLTVPGI
KYVIDPGTARVSRYSHRLKVQRLPIEPVSQASANQRKGRCGRVSEGICVRLYSEDDFLAR
PEFTDPEILRTNLASVILQMTSIGLGDIAGFPFIDPPEARNISDGVQLLQELGALAPTQG
RELTPLGRKLAQLPIDPRLARMVVEADRNGCVREVMVIAAALSIQDPRERPADKQQAADE
QHARFKDAGSDFTSYLKLWEYLKEQQKERSSNQFRKMCRTEFLNYLRVREWQDVYAQLRQ
VAKTLGVHVNTEPGETRNIHVSLLSGLLSHIGLKDVPKREQGKKEQGRRQLAEFLGARGA
RFAVFPGSALSKQPPQWVMAAELVETSRLWGRTVAKIEPEWAERLAEHLVKRTYSEPRWD
AKRGAVVATEKVTLYGVPIVAARRVNYGRIDPELSRELFIRHALVQGEWSTHHAFYARNQ
ELLAEVAELENRARRRDIVVDEETIFDFYAERVPADVVSARHFDSWWKKARHEDAELLTF
SKKMLVNDVAKVEPEAYPDEMDRGGLTFSLSYRFEPGVGGDGVTVRLPLPALTKVPDDAL
SWQVPGLRTELVVALIRSLPKPVRRNFVPVPDVAAAALSRIGVDEALLPALERELRALTG
VVVPREEWNLDQVPDHLRLTFQVVGEAGEELAVGKDPAALKLRLKQRLRASLAEAAGSWA
RTGVVRWDFGDLPRAVRRERSGIVVTAYPALVDKGTSVAVEILDTPGRQAHAMRLGTRRL
VTLNVPSPVKLLQRGLSNSEKLTLTRNPHGGVAPLLADCIAAAVDKLVADAGGPVWKQDA
FAGLTEKVRVGLGEAVFEVVGRVRKVLEAAQEAELAIGAVRGPGVEESLADARAQLSGLV
HAGFVAEAGAARLDDVVRYLKGISVRVEKLGRDVRRDQEWMDRVHAVHAEYRELRAKLPS
DEPQPGLDEVRWMVEELRLSYFAQTIGARYTVSDKRIFKALDAVPR
NT seq
3921 nt
NT seq
+upstream
nt +downstream
nt
atgaacacgccgtctttcgccgacctgcagcaacgcctgccccagctcatgactcgggac
cagcgccgcctgcgccgccgcctcgacggcgtccgcaagatgcgcgacgagcgggcacgg
gcaggcgtgaccgccgagatcgccgccgagttcgaccaggccgagctgagggtggcgctg
cgccgcgaggccctgcccacgatcacctacccggccgagctgccggtgagcgcgcacaag
gacgagatcgccgcgctcatccgcgaccaccaggtggtggtcgtggccggtgagaccggg
tcgggcaagaccacgcagctgcccaagatctgcctcgagctgggccggggcgtcctcggc
cagatcgggcacacccagccgcgcaggctcgccgcccgcaccgtcgccgagcgcgtcgcc
gaggagctgggcaccgagctgggcgcggcggtcggctacaaggtccggttcaccgaccag
tccggcgacgacacgctggtcaagctcatgaccgacggcatcctgctcgccgagctccag
accgaccggatgctctcccgctacgacacgatcatcatcgacgaggcgcacgagcgcagc
ctcaacgtcgacttcctcctcggctacctcaagcagttgctgccccagcgcccggacctc
aaggtcgtcatcacctcggcgaccatcgacccgcagcgcttctcccggcacttctccgac
gcgcccgtcatcgaggtctccggccgcacctacccggtcgaggtgcgctaccggccgctg
gtcgacccggaggacccggaggccgacccggaccgcgaccagacccagggcatctgcgac
gccgtgcgcgagctccaggccgaggggcccggcgacgtgctggtgttcctgtccggcgag
cgggagatccgcgacaccgccgacgccctgaacgcgctcaagctgcgcgacaccgaggtg
ctgccgctgttcgcgcggctgtcgttcgccgagcagcaccgggtgttccagccgcaccgg
ggcaggcgggtcgtgctggccacgaacgtggccgagacctcgctgaccgtgcccggcatc
aagtacgtgatcgaccccggcaccgcccgcgtctcccgctacagccaccggctcaaggtg
cagcgcctgcccatcgaaccggtgtctcaggcctcggccaaccagcgcaaggggcggtgc
ggccgggtgtccgagggcatctgcgtgcggctgtactccgaggacgacttcctggcgcgg
ccggagttcaccgacccggagatcctgcgcaccaacctggcgtcggtcatcctgcagatg
acctcgatcggcctcggcgacatcgccgggttcccgttcatcgacccgcccgaggcgcgc
aacatcagcgacggcgtgcagctgctccaggagctgggggcgctggcgcccacgcagggg
cgggagctgacgccgctggggcgcaagctcgcgcagctgccgatcgacccgcgcctggcg
cggatggtcgtggaggccgaccgcaacgggtgcgtgcgcgaggtcatggtgatcgcggcg
gcgctgtccatccaggacccgcgcgagcgacccgccgacaagcagcaggccgccgacgag
cagcacgcccggttcaaggacgcggggtcggacttcacctcgtacctgaagctgtgggag
tacctgaaggagcagcagaaggagcgctcctcgaaccagttccgcaagatgtgccgcacc
gagttcctgaactacctgcgggtgcgcgagtggcaggacgtgtacgcgcagctgcggcag
gtcgccaagacgctcggggtgcacgtcaacaccgagccgggcgagacgcgcaacatccac
gtgagcctgttgtccgggctgctctcgcacatcgggctcaaggacgtgcccaagcgcgag
caggggaagaaggagcagggcaggcggcagctcgccgagttcctgggggcgcggggggcg
cggttcgcggtgttccccggttcggcgctgagcaagcagccgccgcagtgggtcatggcg
gcggagctggtggagacctcccggctctgggggcgcacggtcgcgaagatcgagccggag
tgggcggagcggctggccgagcacctggtcaagcgcacgtacagcgagccgaggtgggac
gccaagcgcggggcggtcgtggcgaccgagaaggtgacgctgtacggggtgccgatcgtg
gctgcccggcgggtcaactacgggcggatcgaccccgagctgtcgcgggagctgttcatc
cggcacgcgctggtgcagggcgagtggagcacgcaccacgcgttctacgcgcgcaaccag
gagctgctggccgaggtcgcggagctggagaaccgggcgcggcggcgggacatcgtggtc
gacgaggagacgatcttcgacttctacgcggaacgggtcccggcggacgtggtgtcggcg
cggcacttcgactcgtggtggaagaaggcgcggcacgaggacgccgagctgttgacgttc
agcaagaagatgctggtcaacgacgtggcgaaggtggagcccgaggcctacccggacgag
atggaccggggtgggctcacgttctcgctgtcctaccggttcgagccgggggtgggcggg
gacggggtgacggtgcggttgccgctgcccgcgctgacgaaggtgccggacgacgcgctg
tcgtggcaggtgccggggctgcggaccgagctggtggtggcgctgatccggtcgctgccc
aagccggtgcggcgcaacttcgtgccggtgccggacgtggcggcggctgcgctgtcgcgg
atcggggtggacgaggcgctgctgcccgcgctggagcgggagctgcgggcgctgaccggg
gtcgtggtgccgcgtgaggagtggaacctcgaccaggttcccgatcacctgaggttgacg
ttccaggtggtgggggaggcgggcgaggagctggccgtggggaaggaccccgcggcgttg
aagttgcggctcaagcagcggttgcgggcgagcctggcggaggccgcggggagctgggcc
cggaccggggtggtgcggtgggacttcggcgacctgccgcgcgcggtgcggcgggagcgg
tcggggatcgtggtcacggcctatccggcgctggtggacaaggggaccagcgtggcggtg
gagatcctggacacgcctgggcggcaggcgcacgccatgcggttggggacgcggcggttg
gtcacgttgaacgtgccgtcgccggtgaagctgctgcagcgcgggttgagcaactcggag
aagttgacgctgacccggaacccgcacggtggggtcgcgccgttgttggcggactgcatc
gcggcggccgtcgacaagctggtggccgacgccggggggccggtgtggaagcaggacgcc
ttcgcggggttgacggagaaggtccgggtcgggctgggcgaggcggtgttcgaggttgtg
gggcgggttcggaaggtcttggaggcggctcaggaggccgagctggccatcggggcggtt
cgggggcctggggttgaggagtcgttggccgacgctcgggcgcagttgagcgggctggtg
cacgccgggttcgtggctgaggccggggcggcccggttggacgatgtggtgcggtacctg
aaggggatctcggttcgggtggagaagctcgggcgggatgttcggcgggatcaggagtgg
atggaccgggtgcacgcggtgcacgcggagtaccgggaattgcgggccaagttgccttcg
gatgagccgcagccggggttggacgaggttcggtggatggtggaggagctgcggttgagc
tacttcgcgcagaccatcggggctcggtacacggtttcggacaagaggatttttaaggct
ttggacgcggttcctcggtga
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integrated database retrieval system
