Actinosynnema pretiosum: CNX65_20325
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Entry
CNX65_20325 CDS
T05092
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
apre
Actinosynnema pretiosum
Pathway
apre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CNX65_20325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
apre03021
]
CNX65_20325
03019 Messenger RNA biogenesis [BR:
apre03019
]
CNX65_20325
Transcription machinery [BR:
apre03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CNX65_20325
Messenger RNA biogenesis [BR:
apre03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CNX65_20325
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
NACHT
AAA
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
ATE55336
UniProt:
A0A290Z8L2
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All DBs
Position
4773276..4774595
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AA seq
439 aa
AA seq
DB search
MTDVIRRAVVVPHPGAVPRRPSHALARPVQNWRKPLNTNTNDTTTSAIPTQRAVHTQHHE
HGDDHFLVTGLLDTAGDSTFLRTNGYTSGEGDVRVPQSLVRRWGLRKGDEITGCAKPPAE
ERKHARLDHVHSVNDLPPERLSGRPEFTDLPPLHPRERLRLASDAEDLTGRVIDLVMPTG
KGQRALISAPPKAGKTSALRAIARGIGANHPECHVMLVLVGERPEEVTDLRRSVHAEVAA
ATFDQSPQEQIAVAELALERARRLVELGRDVVILLDSLTRLGRAYNLAAPTSGRVLSGGV
SASALHPPKRFLGSARNVEGGGSLTIFATALVETGSTGDTVIHEEYRGTGNAELKLDRSL
ADRRVHPAVDIRQSSTRRDELLMSPAEQSATRVLRRVLQMREGDRGIDVLLDGLRKTSTN
AEFLHRLTQTTPVRRAIAA
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atcaccgacgtcatccggcgtgcggtcgtggtcccacatccaggcgcggtcccgcgccga
ccctcccacgccctcgcacgccctgttcagaattggagaaaacccttgaacaccaacaca
aacgacacaacgacaagcgccatcccgacccagcgcgccgtccacacgcagcaccacgag
cacggtgacgaccacttcctggtgaccggactcctcgacaccgcgggcgattccaccttc
ctgcgcaccaacggctacacctcgggcgagggcgacgtccgcgtcccccagtccctggtc
cgccgctggggcctgcgcaagggcgacgagatcaccggttgcgcgaagcccccggcggaa
gagcgcaagcacgccaggctggaccacgtccacagcgtgaacgacctgccgccggagcgg
ctctcgggcaggccggagttcaccgacctgccgccgctgcacccgagggagcggctgcga
ctggcctcggacgccgaggacctgaccggccgcgtcatcgacctggtgatgcccaccggc
aagggccagcgcgcgctgatctcggctccaccgaaggcgggcaagacctccgcgctgcgg
gccatcgcgcgcggcatcggcgccaaccaccccgagtgccacgtgatgctggtgctggta
ggcgagcgtcccgaggaggtcaccgacctgcggcgcagcgtgcacgccgaggtggccgcc
gcgacgttcgaccagtccccgcaggagcagatcgcggtcgcggagctggcgctggagcgg
gcccgccgcctggtcgagctgggccgggacgtggtgatcctgctggactcgctgacccgc
ctgggccgcgcctacaacctggcggcgcccacctcgggccgggtgctcagcggtggcgtg
agcgcgagcgcgctgcacccgccgaagcggttcctcggctcggcgcgcaacgtggagggc
ggcggttcgctgaccatcttcgcgaccgcgctggtcgagaccggttccaccggcgacacg
gtgatccacgaggagtaccggggcaccggcaacgccgagctgaagctggaccgctcgctg
gccgaccgcagggtgcacccggcggtggacatccggcagagcagcacccggcgcgacgag
ctcctgatgtcaccggccgagcagtcggcgacgcgggtgctgcgcagggtcctgcagatg
cgcgagggcgatcgcgggatcgacgtgctgctggacggcttgcgcaagacctccacgaac
gcggagttcctgcaccggctcacccagacgacgccggtccgccgcgcgatcgcggcctga
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