Actinosynnema pretiosum: CNX65_30290
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Entry
CNX65_30290 CDS
T05092
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
apre
Actinosynnema pretiosum
Pathway
apre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CNX65_30290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
apre03021
]
CNX65_30290
03019 Messenger RNA biogenesis [BR:
apre03019
]
CNX65_30290
Transcription machinery [BR:
apre03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CNX65_30290
Messenger RNA biogenesis [BR:
apre03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CNX65_30290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
Collagen
Spore_III_AA
AAA_25
NACHT
Motif
Other DBs
NCBI-ProteinID:
ATE57050
UniProt:
A0A290ZDD1
LinkDB
All DBs
Position
complement(7068754..7070838)
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AA seq
694 aa
AA seq
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MSNTDVLSSDSAAPNAAASSGAEENALSTPTNGGAPARKRAGLSGMVLAELRELAGQLGI
DSTAKLRKGDLIAAIKERQGGTSGRGSAATPPKAEKPKAEKAAAKPAEAPAPAAEKAVEK
PTQQQLDVPERAGEEETGRRGNRRRRSANRPAGSPEAPVAAAAAAAPAQVEAPQQAEQRP
ERAERSDRGERGERSERQGRERGERSDRGDRSERGDRGERGERSDRGERSDRGERSERGE
RGDRNRDRDRGERGERNRDRDRDRDRDRDRQSNNVPEDDGDDEGGRRGRRFRDRRRRGGR
GEGTGAGTDTEVRDDDVLLPVAGILDVLENYAFVRTSGYLAGPNDVYVSLSLVRKHGLRR
GDAIIGAVRQPRDGEQQRQKFNPLVRVDKINGLDPEESRNRPDFTKLTPLYPNERLRLET
EPHILTTRVIDLVMPIGKGQRALVVSPPKAGKTSVLQSIANAITTNNPECHLMVVLVDER
PEEVTDMQRSVKGEVIASTFDRPPSDHTTISELAIERAKRLVEMGHDVVVLLDSITRLGR
AYNLAAPASGRILSGGVDSTALYPPKRFLGAARNIEGGGSLTVIATALVETGSAGDSVIF
EEFKGTGNAELKLDRKIADKRTFPAVDVDSSGTRKEDLLLSPDELAVMHKLRRVLHALDG
QQAIDLLLDRLRKTRTNIEFLMQVAKTTPGADND
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
gtgagcaacaccgatgtgctgagcagtgattccgctgctcccaacgccgctgccagttcc
ggagccgaggagaacgctctgtccacccctacgaacggcggcgccccggcgcgcaagcgc
gcgggactctccggcatggtgctggccgaactgcgtgaactcgcaggtcagctcggcatc
gacagcacggccaagctccgcaagggcgacctcatcgcggccatcaaggagcggcagggc
ggcacctccggtcggggcagtgccgcgacgccgccgaaggccgagaagccgaaggccgag
aaggccgccgcgaagcccgccgaggcccccgcccccgccgccgagaaggcggtcgagaag
ccgacccagcagcagctcgacgtccccgagcgcgcgggggaggaggagaccggacgtcgc
ggcaaccgccgtcgccggtccgccaaccgccccgcgggcagccccgaggcgcccgtcgcc
gcggctgccgccgccgctcccgcgcaggtcgaggccccgcagcaggcggagcagcggccc
gagcgggctgagcgctccgaccggggtgagcggggcgagcgctccgagcgccagggccgg
gagcggggcgagcgctcggaccggggtgaccgctccgagcgcggtgaccggggtgagcgc
ggcgagcgctccgaccgcggcgagcgctccgaccggggcgagcgttccgagcggggcgag
cgcggcgaccggaaccgcgaccgcgatcggggtgagcggggcgagcgcaaccgcgaccgc
gaccgggatcgcgaccgggaccgcgaccgccagagcaacaacgtgcccgaggacgacggc
gacgacgagggcggccgtcgcggtcgccgcttccgggaccgccgccgtcgcggcggccgg
ggcgagggcaccggcgcgggcaccgacaccgaggtgcgcgacgacgacgtcctgctgccc
gtcgcgggcatcctggacgtgctggagaactacgccttcgtgcgcacctccggctacctc
gcgggcccgaacgacgtctacgtgtcgctctcgctggtgcgcaagcacggcctgcggcgc
ggtgacgccatcatcggcgccgtccgccagccgcgcgacggcgagcagcagcggcagaag
ttcaacccgctggtgcgcgtcgacaagatcaacgggttggacccggaggagtcgcgcaac
cgccccgacttcaccaagctgaccccgctctacccgaacgagcgactgcgcctcgagacc
gagccgcacatcctcaccacgcgcgtcatcgacctggtgatgccgatcggcaagggccag
cgcgccctcgtcgtgtcgccgcccaaggcgggcaagacctcggtgctccagtcgatcgcc
aacgcgatcacgacgaacaaccccgagtgccacctgatggtggtcctcgtggacgagcgc
cccgaagaggtcaccgacatgcagcggtcggtgaagggcgaggtcatcgcctccaccttc
gaccgcccgccgtcggaccacaccacgatctcggagctggccatcgagcgggccaagcgc
ctggtcgagatgggtcacgacgtggtcgtgctgctcgactccatcacccgcctcggccgc
gcctacaacctggcggccccggcgtccgggcgcatcctgtccggtggtgtcgactcgacg
gcgctgtacccgccgaagcgcttcctcggcgcggcccgcaacatcgagggcggcggctcg
ctgaccgtgatcgccaccgcgctggtggagaccgggtcggccggtgacagcgtgatcttc
gaggagttcaagggcaccggcaacgccgagctcaagctcgaccgcaagatcgccgacaag
cggaccttccccgcggtggacgtggactcgtccggcacccgcaaggaggacctgctgctg
tccccggacgagctggcggtcatgcacaagctgcgccgggtgctgcacgcgctcgacggc
cagcaggcgatcgacctgctgctcgaccggctgcgcaagacgcgcaccaacatcgagttc
ctgatgcaggtcgcgaagaccacgccgggcgcggacaacgactga
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