Ahaetulla prasina (Asian vine snake): 131186494
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Entry
131186494 CDS
T09329
Symbol
NXF1
Name
(RefSeq) nuclear RNA export factor 1 isoform X1
KO
K14284
nuclear RNA export factor
Organism
apri
Ahaetulla prasina (Asian vine snake)
Pathway
apri03008
Ribosome biogenesis in eukaryotes
apri03013
Nucleocytoplasmic transport
apri03015
mRNA surveillance pathway
apri05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
apri00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
131186494 (NXF1)
03015 mRNA surveillance pathway
131186494 (NXF1)
03008 Ribosome biogenesis in eukaryotes
131186494 (NXF1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
131186494 (NXF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apri03019
]
131186494 (NXF1)
03009 Ribosome biogenesis [BR:
apri03009
]
131186494 (NXF1)
Messenger RNA biogenesis [BR:
apri03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
131186494 (NXF1)
mRNA cycle factors
Stress granule specific factors
131186494 (NXF1)
Ribosome biogenesis [BR:
apri03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
131186494 (NXF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
UBA_8
LRR_8
LRR_9
LRR_4
Motif
Other DBs
NCBI-GeneID:
131186494
NCBI-ProteinID:
XP_058016114
LinkDB
All DBs
Position
17:4984449..5005776
Genome browser
AA seq
724 aa
AA seq
DB search
MAAAAAEAASSPPRLRIGRLASVPEPLAEGSGEKKGERLRRRRRRRQRRRKGPAGQEPLF
SEASLRGLCAEGGESFSEVPASGAPFMAEGGKGGYSEHDDRVATGNRHYARRRKGRVPFR
GKMYSEMGSHQRGWNSSGSGTRSWLDDDDGDVLMSDAHEVLRTRYSPYGSRPHRPDRGSP
SLMNATVRRNLNIGDRAPPPHKGTGSKKTWFRITIPYGRKYEKNWLMNAIRETCSVPFHP
VEFHCVNNRVVFYVEDTSVANALKQISRKICSPDGYKVAILINTCNPPITVQHELKPEDI
EQLKQCMSKRYDSANQALDMKNIHTDPDLIAQNIDIVLNRRNCMLAVLQIINDNIPELLS
LNLNDNKLYRLDDMSELYRKAPNLKILNLSCNQLKTEHELDKLKGLKLDELWLDNNPLCD
GFRDRSIYISSIRERFPKLLRLDGHELPPPISFDVEAPTTLPPCKGSYFASEGLKMLIVR
FLQQYYTIYDSGDRQGLLDAYHEGACCSLSIPFSVNHPYRNSLAEYFKNSRNVKRLKDPS
LRFRLLKHTKLNVVAFLSELPKTQHDVNSFVVDVCAQTNSLLCFTLSGIFKEVDSRSRDM
VRAFTRVFIAVPVGHSGLSIVNDQIFIRKANNTEIRKAFIMPAPTPSSSPVPTPSAEPMP
SSIPGPILTVEQQEMLQNFSLQSGMNMEWSQKCLMDNDWNYAKAAHAYTQLKAEQKIPEV
AFIH
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcggcagcggaggctgcgagttccccgccgcgcctgcgcattgggcggctc
gcctccgttccagagccactcgctgaggggagcggggagaagaaaggcgagcggttgcgg
cggcggaggaggcggcgtcagcggcggcggaaggggccggcgggccaagaaccactcttt
tccgaggcctctctccgcggcctgtgcgccgaggggggggagtcgttctccgaggtgccc
gccagcggggctcccttcatggccgagggcgggaaaggcgggtacagcgaacatgacgac
cgcgtggccaccggcaacaggcactatgcacggaggagaaagggccgtgtccccttccga
ggaaaaatgtacagcgagatgggctctcaccagcgcggttggaacagttctgggtccggt
actcgtagctggctcgacgacgacgacggggatgttctcatgagcgatgctcacgaagtg
ctccgaacgcgctactctccttacgggtcacgtccgcacagaccagaccgagggagtccg
agccttatgaatgccaccgtgagacgaaatctgaatattggggaccgtgctcctcctcct
cacaaagggacaggaagcaagaagacttggttcaggattacgattccttacggaagaaaa
tacgaaaagaactggctgatgaatgccatacgcgaaacctgcagcgtccccttccacccc
gtggagttccactgcgtgaataatcgggttgtgttctacgtagaagacacttctgtggcc
aacgcccttaagcagatctctcgtaaaatttgttctccggatggatacaaggtggcgata
ctcataaacacatgcaacccgccgataactgtccagcatgaactgaaaccagaagacatt
gagcagctgaagcaatgtatgagtaaaaggtacgatagcgccaatcaagctttggatatg
aaaaatatccacacagatcccgatctgatagcccagaatatcgacattgtgttgaaccgc
cgaaactgcatgttagctgtgctgcagatcatcaacgacaacatccccgagctcctctcc
ctcaatctaaatgacaacaagctctaccgcctcgacgacatgtctgagctatatcggaaa
gctcccaacctgaagatcctcaacttgtcttgtaaccagctgaagaccgaacacgagctg
gacaagctgaaaggcttaaagctggacgaactgtggctggacaacaaccccctgtgcgac
ggctttcgggaccgctccatttatatcagctccatccgagaacggttcccaaagctgctg
cggctggacggtcacgagctgcccccaccgatctcctttgacgttgaagccccgaccact
ctgcctccgtgcaagggcagttatttcgcctccgaaggcttgaaaatgctgatcgttcgc
tttttacaacaatactacaccatctacgattctggagaccgacaaggcctcctggatgcc
tatcacgagggggcgtgctgttcgctgagtatcccattctccgtgaatcacccttacagg
aactctttggctgaatatttcaaaaacagccggaatgtgaagcgactgaaggatccttcc
ttgcgcttccgactcctcaaacacactaagttgaatgtcgtggctttcctcagcgaattg
cccaagactcagcacgacgtgaattccttcgtggtggacgtctgcgcgcaaacgaattcg
ctgttatgttttaccctgagcggaatctttaaggaagtcgacagccggtctcgggacatg
gtgcgagccttcacccgggtcttcattgccgtacctgtgggccacagcgggttgagcatt
gtgaacgaccagatcttcatccgcaaagccaacaacacggaaatccgcaaagccttcatc
atgccggcccccaccccgtcctccagccccgtgcccactccttccgccgagcccatgccc
tcttcgatccccggacccatcctgacggtcgagcagcaggaaatgttgcagaatttctcc
ttgcagtcgggcatgaacatggagtggtctcagaagtgcctcatggacaacgattggaac
tacgcgaaagcagctcacgcctacacccagctgaaggctgagcagaaaattcccgaagtg
gcgtttatccactga
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