Ahaetulla prasina (Asian vine snake): 131188286
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Entry
131188286 CDS
T09329
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
apri
Ahaetulla prasina (Asian vine snake)
Pathway
apri03013
Nucleocytoplasmic transport
apri03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
apri00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
131188286 (UPF1)
03015 mRNA surveillance pathway
131188286 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apri03019
]
131188286 (UPF1)
Enzymes [BR:
apri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
131188286 (UPF1)
5.6.2.5 RNA 5'-3' helicase
131188286 (UPF1)
Messenger RNA biogenesis [BR:
apri03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
131188286 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
131188286 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
131188286
NCBI-ProteinID:
XP_058019440
LinkDB
All DBs
Position
1:complement(365661951..365692566)
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AA seq
1139 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGGSGSGGGVIA
PGTPGLPGGGVGVGAGGPPSVVAPGQLDAQVNGPDGILQNGAVDDNVPKTSQLLAELNFE
EDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCK
EVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDS
SQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVD
EEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFT
LPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDTFVDYGDEIAIELRSSVGAPV
EVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRF
TAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPS
NIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDE
TGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATE
PECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYR
MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTS
YLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEI
ASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQP
LWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIP
GSVYDRSSQGRPSNMYFQTHDQIGMISAGPSHVTTMNIPIPFNLVMPPMPPPGYFGQANG
PAAGGMFAGRGNLKGKTGRGGRQKNRFGIPGPSQSNLPNSQGSQDVVSQPFSQGPLTQGY
ISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGVTGLSQY
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaagcgtacgggcccagttcgcagacgttgactttcctcgacaccgaggag
gccgaactgctgggcgctgacacgcaaggctccgagttcgagttcaccgactttaccttg
cccagccagactcaaacgccgcccgggggaggctccgggagcggtggaggcgtcatcgcg
ccggggaccccgggactcccggggggtggcgtcggagtgggcgcgggggggccgccttcc
gtcgtcgctccggggcagttggacgcccaggtaaatggaccagatggcatcctccagaat
ggggcagtggatgataatgtgcctaaaaccagccaacttcttgcggagctcaattttgaa
gaagacgaggaagacacttactacaccaaggaccttcctgtacatgcctgcagctattgt
ggtatccatgacccagcttgcgtggtctattgtaacaccagcaagaagtggttctgcaat
ggacgtgggaatacctctggcagtcacattgtgaaccaccttgtgagagccaagtgcaaa
gaagtgactcttcataaggatggtcctctgggcgagaccgtcttggaatgctacaattgt
ggctgtcgtaatgtgtttcttcttggtttcatcccggccaaagctgactccgtggtcgtt
ttgttatgcaggcagccttgtgccagccagagcagcttaaaggacatcaattgggacagc
tcacagtggcagcctttgattcaggatcgctgcttcctttcctggctagtcaaaattccg
tcagaacaggaacaactgagggcccggcagatcacagctcagcaaattaacaaactagaa
gaactgtggaaggagaacccatctgctactttggaggacctggaaaagcctggggttgat
gaagagccacagcatgtcctccttagatatgaagatgcttatcagtaccagaacatcttt
ggtcctctggtcaagcttgaagcagactatgacaagaaattgaaggaatctcagactcaa
gacaacattactgtgagatgggatcttggtttgaacaagaaaaggattgcctacttcacc
ctgccaaagactgattcagatatgcgtttgatgcaaggggatgagatctgcctgagatac
aaaggggacttggccccactgtggaaaggaattggccatgtgattaaagttcctgatact
tttgtagattacggtgatgaaattgcaattgagttgagaagtagtgtcggtgcgcctgtg
gaagtgactcacaatttccaagtggattttgtatggaaatcgacatcctttgatagaatg
cagagtgccctaaaaacatttgctgtggatgaaacatcagtttctggctacatctatcac
aaacttctgggtcatgaggtggaagatgttataattaaatgtcagttgccaaagcgcttc
acagcacaaggacttccagatctcaaccattctcaggtgtatgcagtgaagactgttttg
cagcgtcccttgagtcttatccaggggccccctggcacaggcaagactgtgacatcagcc
acaattgtgtatcacctggcaaggcaaggaaatgggcctgtgctggtttgtgccccaagt
aacattgctgtggaccagctgaccgaaaaaatacatcagacggggctgaaggtggtgcgc
ctgtgtgcaaagagccgcgaggccattgattcacctgtctctttcttagcattgcataac
cagatcaggaatatggatagcatgccagagctccagaaactgcagcaactgaaagatgag
actggggaactgtcatccgctgatgagaagcgctaccgagcacttaaacgaacagctgag
cgggaattgctaatgaatgcagatgtcatttgttgcacatgtgtcggagccggcgaccca
agacttgctaaaatgcagtttcgttccattttgatcgatgaaagcacacaggccactgag
ccagagtgcatggtgcctgttgttcttggggcaaaacagttgatcctagtgggcgatcat
tgccagctcggccccgtcgtaatgtgcaagaaggcagctaaagcaggtctgtcgcaatcc
ctctttgagcgactggtggtattgggcattcggcccattcgcctgcaagtccagtaccgc
atgcacccagccctgagtgcttttccttccaacatcttttatgaagggtcactccagaat
ggtgtcactgcagcagaccgtgtgaagaaggggtttgacttccaatggcctcagccagac
aagcccatgtttttctacgtgacccaagggcaagaagaaattgcaagttctggcacttct
tatttgaacagaacagaggcagccaatgtggagaaaataaccacgaagctactgaaggct
ggtgcaaagccagatcagattggtatcatcacaccctatgagggccagcgttcatatttg
gtgcagtacatgcagtttagtggatctttgcataccaagctttatcaggaagttgaaatc
gctagtgttgatgctttccaagggcgagagaaggacttcattatcctctcctgtgttaga
gccaacgagcatcaaggcattggcttcctgaatgacccccggcgtctcaatgtggctctc
acaagagcaagatatggggtcattattgttgggaatccaaaagcactctccaagcaacct
ctttggaatcaccttctgaactactacaaggagcaaaaggtcctggtggagggaccattg
aacaatctccgtgagagccttatgcagtttagcaagcctcgaaaactggtcaacactatc
aatccaggagcccggtttatgacaactgctatgtatgatgcccgtgaagctattatccct
ggatcagtttatgatcgcagcagccaaggccggccatccaacatgtatttccaaacacat
gatcagattgggatgatcagtgctgggcccagtcatgtcaccaccatgaacattcctatc
ccattcaacttggtgatgcctcccatgccacccccagggtactttggacaggccaatgga
ccagctgcaggtgggatgtttgcaggacgtggaaacctgaaaggcaaaactggccgtggt
gggcgacagaagaaccgttttgggattccagggcccagccagtcgaacctccccaacagc
cagggtagccaagatgtggtctcccagcctttctctcagggccccttgactcagggttac
atctccatgagccagccctcgcagatgagccagcctggcctctcgcagccagaattgtca
caggatagttaccttggtgatgagtttaaatctcagattgatgtggccctgtcgcaggat
tcaacttaccagggggaacgcgcatatcaacatggagtgacagggctgtcacagtattag
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integrated database retrieval system
