Ahaetulla prasina (Asian vine snake): 131193047
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Entry
131193047 CDS
T09329
Symbol
SKIC2
Name
(RefSeq) superkiller complex protein 2
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
apri
Ahaetulla prasina (Asian vine snake)
Pathway
apri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131193047 (SKIC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apri03019
]
131193047 (SKIC2)
Enzymes [BR:
apri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131193047 (SKIC2)
Messenger RNA biogenesis [BR:
apri03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
131193047 (SKIC2)
mRNA degradation factors
3'-5' decay
Ski complex
131193047 (SKIC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
AP3D1
Motif
Other DBs
NCBI-GeneID:
131193047
NCBI-ProteinID:
XP_058028782
LinkDB
All DBs
Position
2:14031246..14086439
Genome browser
AA seq
1274 aa
AA seq
DB search
MDLERIVLPPRGPLELPLSILEVGCAGRFELITREEPTKEGFPLTTLPHGLPPYAEDLAS
ELEQHYLNSPEWLPIHDFERSHRFWPREKDVQSLFALEVTPVHSTLQAERNPTTGELLGF
KEALVDNTGLSAKNSLSFQRAPGPPSESLRGSATNYPFWPGGIDEPSLELIKAQEDKEED
IDFEKDLLTVPPGWKKGVEFTKQEIMASPGLLNLTNLLGALDTFELEASSDEEAKEKTEE
EEKRRKKGKNKGAREEEIPPAEPAPLHRVNSLEELVLKEVTPVPKSAPQAAPAPAPATVP
PKEQWAILVDVSSPVDDFYKLIPDPAFKWPFEPDVFQKQAILHLEKHDSVFVAAHTSAGK
TVVAEYAIALSQKHMTRTIYTSPIKALSNQKFRDFKNTFGDVGLLTGDVQLHPDASCLIM
TTEILRSMLYNGSDVLRDLEWVIFDEVHYINDSERGVVWEEVLIMLPDHVNIILLSATVP
NTLEFADWIGRIKRKKIYVISTLKRPVPLEHYLYTGNSQKTQNELFLLVDARGTFLTKGY
YDAVDAKKDRTSKHSQTFGAKQPMHAGAGPGQDKNIWLSLIDMLRKKDQLPVVAFTFSRN
RCDENASMLTTVDLTTTTEKSEIHVFFQKCISRLKGTDRQLPQVLHMVDLLKRGIGVHHS
GILPILKEVVEMLFSKGLVKILFATETFAMGVNMPARTVVFNSVRKHDGANFRDLVPAEY
IQMAGRAGRRGLDTTGMVIILCKNQVPEMSDLHRMMLGKPTRLQSQFRLTYTMILNLLRV
EALRVEDMMRRSFSEFHTRKDSKVYEHRIAQLSSMLANMDMPDTSRQLGDLQEYYSAVRE
LREIRERIQRRVMESMNGLKALSVGRVIVVSNQEHKNALGVILQVSSDATNRVFSTLVMC
EKNSMERDLAEGQELNRPPSAEVPLPEDLLHTKLFLPEGPCGHTIKKLGPADILGITTKT
LRVNADRILEDFRKRQMPRFRNDPPGPSAATATQELLRLAEGSPEGLPLLDPVNDLQLKD
LEVVDSMILARSLEERLPEFQCVHSPLFHIEFVRFRERQRVLDELDQLRFLLSDQSLLLL
PEYHQRVEVLRSLGYINEGGAVELKGSVARQISNHELLLTQLLLDNALTDLRPEEIVALL
SCTVCQVRTQVEPQLPSVLQKGIEHIRSVAEQIALLQRKCGLQESIEDFVEQYKFGLVEV
VYEWARGMPFAEIARLTDVQEGIIVRCIQRLDETCREMRNAARVTGEPTLHAKMEAASNM
IKRDIVFAASLYTQ
NT seq
3825 nt
NT seq
+upstream
nt +downstream
nt
atggatctggagaggatagtcctccctccccggggacctttagagctgcctctttccatt
ttggaggttggatgcgctggccgttttgagctcatcacccgagaggaacccaccaaagag
ggatttcccctgaccacactgccacatgggctgcccccgtatgctgaagatctggcctcg
gaattggagcagcattacctcaacagcccagaatggcttcccatccatgactttgaaagg
tctcacaggttctggccccgagagaaggatgtccaatcactcttcgcactggaggtcaca
cctgtgcactccaccctccaggctgaacgcaatcccaccaccggggagctgctgggtttt
aaagaggcacttgtggacaacacgggattatcagccaagaattcgctttccttccagcga
gcgcctggccctccttccgaatctctgagaggcagtgccaccaactaccccttctggcca
ggtgggattgatgagccaagcttggaactgattaaggctcaagaagataaggaagaggac
attgattttgagaaagatttgctgacggtgccacctggatggaaaaaaggggtggaattc
accaaacaagagatcatggcctccccaggattgctgaacttaaccaatttgctgggtgca
ctggacacctttgagctggaggcctccagtgatgaagaagccaaagagaagacagaggaa
gaggagaagaggaggaagaaagggaagaataagggagcaagggaagaagagatccctcca
gcagaaccagcaccattgcacagagtgaacagcttggaggaactggtgcttaaggaggtg
acacccgtccccaaatcagccccacaggctgcgcctgcccctgcacctgccacagtgccc
cctaaagaacagtgggctatcctggtcgatgtaagctcccccgtggacgatttctacaag
ctaattcctgatccagccttcaagtggccttttgagcccgacgtattccagaaacaggca
attctccacttggagaagcatgattcagtctttgtcgccgcccacacctctgcgggaaag
actgtcgtagctgagtatgccattgctctgtcgcagaagcacatgacgcgcaccatctac
acgtccccaatcaaagcgctttctaaccagaagtttcgggatttcaagaacacctttggg
gatgttggcttgttgacaggagatgtgcagctgcatccggatgcctcctgcctcatcatg
acaaccgagattctcaggtctatgctctataatggctccgatgtcctcagagacctagag
tgggtgatctttgatgaagtgcattatattaatgattctgagcgcggtgtggtttgggaa
gaggtcctcatcatgttgccagaccacgtaaacatcattttgctgagtgccaccgtcccc
aacaccctggagtttgctgactggattgggcgaatcaagcggaagaagatttatgtgatc
agcacactgaagcgccctgttccactggagcattatctgtacacgggaaatagccagaag
acgcagaacgagctcttcctgctggtggacgcccgtgggacattccttacaaaggggtat
tatgatgctgtagatgccaaaaaggaccgaactagcaaacactcccagacctttggggcc
aaacagccaatgcatgcaggagccgggccaggccaggacaagaacatctggctctccctc
attgacatgctgcgcaagaaggaccagctgccggtggtggccttcacgttctctcgcaac
cgctgcgacgaaaacgcctccatgctgaccaccgtcgacctgactaccacgacggagaaa
agcgagatccacgtcttcttccagaagtgcatctcccgactgaagggtaccgatcggcag
ctgcctcaggttcttcacatggtcgaccttttgaaacgtgggattggggtacaccacagt
ggcattctgcccatcctcaaggaggtagtggagatgcttttcagcaaaggccttgtcaag
atcctcttcgccacagagactttcgccatgggggtgaacatgccagcaaggactgtggtt
ttcaattccgttcgtaaacatgatggtgcaaatttccgggacttggtaccagccgaatac
atccagatggccggccgggctgggcgtcgaggtctcgacacaactgggatggtgattatt
ctgtgcaaaaaccaagtgcctgaaatgtccgatcttcaccgcatgatgttgggcaaacct
actcggttgcagtcccaattccgcctgacgtacaccatgatcctaaacctgttgagagtg
gaggcgctccgcgtggaagacatgatgaggagaagcttctcagagttccacacccggaaa
gacagcaaggtctatgaacacagaatcgcccagctgagcagtatgttagccaacatggac
atgccagacacgtcaaggcagcttggtgacttacaggagtattattctgcagtcagagaa
ctgcgagagatacgggagcgcattcagaggcgagtaatggaatcgatgaacggattgaaa
gccctttctgtgggacgagtgattgtggtgagcaaccaagagcacaagaatgccctgggg
gtcatcttgcaggtttcttcagacgcaaccaatcgggtcttcagcactttagtgatgtgt
gagaagaactccatggagcgggacttggctgaaggccaggagttgaatcgtcctccatct
gctgaggtgcctctgcccgaggatcttctccacacaaagctcttccttcctgaaggcccc
tgtggacataccataaagaaactgggccctgcagatattctgggcatcacaacaaaaacc
ctccgggttaatgcggaccgtatcctggaggatttcaggaaacgacaaatgcccagattc
aggaacgacccacctggaccatcagcggccacagcaacccaggagctgctgcgtttagcc
gagggctctccggaaggcctccccctcctggatcccgtgaacgaccttcagctgaaggat
ctggaagtcgtagacagcatgatcctggcccgcagtctggaggaacgtttgccagagttc
cagtgtgtccacagcccactcttccacatagagtttgtacgcttccgagagcgccaacgg
gtgttggacgaactcgaccagctgcgcttcctgctgtcagatcagtcccttctcttactg
cctgagtatcaccagcgcgttgaagtcttgcgttccctgggctacatcaacgaaggagga
gccgtggagctcaaggggagcgtggcccgtcagatcagcaaccatgagctgctcctgaca
cagctgcttctggacaatgccctgaccgacctgcggcccgaggagatcgtggccttgctg
agctgcacggtgtgccaggtccggacccaggtggagcctcagctgccctctgtccttcag
aagggcatagagcacatccgctcggtagccgaacagattgccctgctgcagcgcaagtgc
ggcctgcaagaatcgatcgaggattttgtggagcagtacaaattcgggctggtggaagtg
gtttacgaatgggcccgtggcatgccctttgccgagatcgcccgcctgaccgacgtgcag
gaaggcatcatcgtccgctgcattcagcgcctggatgaaacctgtcgcgagatgcgcaac
gctgcccgggtgacgggagagccgaccctgcacgccaagatggaagccgcctccaacatg
atcaagagggacattgtctttgccgctagcctctacacccagtga
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