Ahaetulla prasina (Asian vine snake): 131193886
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Entry
131193886 CDS
T09329
Symbol
COL20A1
Name
(RefSeq) collagen alpha-1(XX) chain
KO
K24357
collagen type XX alpha
Organism
apri
Ahaetulla prasina (Asian vine snake)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
Collagen
Pur_ac_phosph_N
Ig_DSCAM-DSCAML_C
VWA_2
FN3_Tor_3rd
CBM_4_9
Motif
Other DBs
NCBI-GeneID:
131193886
NCBI-ProteinID:
XP_058030267
LinkDB
All DBs
Position
3:221820489..222086219
Genome browser
AA seq
1462 aa
AA seq
DB search
MRRPKVVLLGQDYFWISCLVLAGFIRLQVCGQGWNRLKLTVLSEDRLQMKWKESEGNTSG
YKVRVKPMAGDSEQEVMLKTKMAKATVGGLSPTKEYTLQIYILNGSQEALFVKRKFVIEE
LKNHSQARNHRKHPTSMPEKGVILPVEVTLPTPDETSTLIGRVEPGKKRQNTPPFKPDDY
MLNAEPTLTLPTLPSIIEFEGDYLARRKMSSENFRKVSHFQCDTSATTDIILLVDGSWSI
GRNNFGLIREFLAALLAPFNIAEDKIRVGLSQYSSDPRTEWDLNTYSTWEQVSEAIRNLR
YKGGNTFTGLALTHVLEHNLQEDAGARPDASKLLILLTDGKSQDDASPPAQTLKNMGIKI
FAVGVKNADETELRQVASEPLEMTVYNVVDFPLLRSLVGRLTWLLCSWIKEKNQKNIGDP
LKTMPVKSGVHLSPTNLLLKEVTSRSMHLIWNSPLITPQRYRVVYYPSRGGIPKEVVLDG
TTSSVELLNLTPQTEYLVSVFPVYENAVGDGLRGISSTLPLSAPRSLTTSEISHNSIKLT
WEPVEGATQYLILSSSTPNGAEDDTKELKVKDPEVWIRGLTPSTEYSLAVYAMYGEDASN
PASIQETTLALSPPRYLHFSNISHMSVHVNWEAASQAVKSHRVMYSSSRGSNVGEMEVPG
NASFAVLKPLSSLTQYFVRVVSVYDEGNSFPTMGNFTTLKVPPPSQLKVTELSRSEVQLE
WEASVASDVVLYQIKWNVLGEDTEEEISVAGNLASSILPGLKENTEYKISIWAYYKDGAQ
SDTVSIWHRISAKNPPTNLYVDSETPSSLRVHWTPPDAAVQHYRISYSPERSHSKQQETI
TVSGRIQSIVLHSLLPARVYTVTVIAVYISGESDPVSVIGRTATVLARLPTMKESQFFKT
EGCPSLRSVDGPTQGFDMMEAFGLMDKEYASIKGVAMEPYIFLGTRTYTLYRDIQLTRKT
SEVLPFGLPMEYTITFLLRLLPESPREAFSIWQITDEDFQPLLSVILDPLKKSLVYFYRD
HEADVEEITFDQQEVKKIFYGSFHKVHVSVSHGWVRLYVDCKKIGEKILGKSEILSTAGF
ITLGKLTRTRGPRSGSAMLQLQSLQIVCSTSWPEEDRCCEIPALRDEEACPSLLPSCSCT
SDVPGLPGPPGPPGNPGRRGIQGEQGEPGPKGEPGPPGQAGPKGPGGHQGTPGSQGLTVQ
GPIGPPGLKGDKGDSGSPGIQGLMGPQGAAGKDGPQGSKGVRGLEGAAGPPGPPGPRGFQ
GLAGTWGNPGDRGPPGEVGPTGLPGPKGERGEKGEAQSLSTIYHLVNQACERLIQSHVLK
FDTFVHEQSRKPVPIWEEEPKAGEPGPTGLTGFPGAKGERGEIGMPGLPGRDGYPGERGV
PGPKGEKGAFGQRVEGSEGPSGQAGPPGEMVVGQQGSKGPPGSIGPSGFPGAPGQPGVPG
PAGRCLPTGCHRDSRRDAGLIP
NT seq
4389 nt
NT seq
+upstream
nt +downstream
nt
atgcggagacccaaggttgtcctgctgggccaagattatttctggatttcttgcctggtg
ctggcaggttttatcagattacaggtatgcggtcaagggtggaaccgcctgaagctgaca
gtcctttcagaagacagattgcaaatgaagtggaaggaaagcgaaggaaacaccagcggg
tacaaagttcgtgttaagccaatggcaggtgactctgagcaggaagtgatgctgaaaacc
aagatggcgaaagcaacggtgggcgggctgagtcccaccaaagaatacactctacagatc
tacatccttaacggatcccaggaggccctctttgtcaagaggaaatttgtgattgaagaa
ctgaaaaaccactcccaggccagaaaccacaggaagcatccaaccagtatgccggagaaa
ggagtaatcttaccagttgaagtcactttaccaactccggatgaaacttcaactttgata
ggaagagttgagccagggaagaaaaggcaaaacacgccaccttttaaaccagatgattat
atgctcaacgctgagccaacgttgacgctgccaaccttaccgagcataatagagtttgaa
ggggattatctggcccgaaggaaaatgagcagcgagaacttcaggaaagtttcccatttc
cagtgtgatacctcggctaccactgatattatcctactggtggatggatcttggagtatc
ggacgcaacaattttggactcattcgagaattcctggcagctttgctggcacctttcaat
attgctgaggataagatcagagtaggcttgtcccagtacagcagcgacccacggacggaa
tgggacctgaatacgtattctacctgggagcaggtgtccgaagccattcggaatttgcgc
tacaagggagggaacaccttcacaggattggcgcttactcacgtcctcgagcacaacctg
caggaagacgcgggcgcgaggcctgacgcgtctaaactcctcatccttttgaccgatggc
aaatctcaagatgatgccagcccacctgcccagaccttgaagaatatgggaatcaagata
tttgctgtgggggtgaaaaatgccgatgaaacagagctgcgccaagtggcctccgaaccc
ctcgagatgacggtctacaatgtagtggattttcctttgctccgttctctggtcggccgg
ctaacgtggctcttatgctcttggatcaaggagaagaaccagaagaatataggggatcca
ttgaaaaccatgccagtgaaatccggggtccacttgagtccaaccaatctcctattaaaa
gaagttacttccagaagtatgcatctcatctggaactcaccactcataacacctcagaga
tacagagtcgtctattacccttctcgaggtggaattcccaaagaggttgtcttggatgga
accacgtcgagtgtggagcttcttaatttgacgccccagacggaatatctggtttcagtc
ttccctgtttatgagaatgctgtgggagatggtctcagaggcatcagttcaacactacct
ctgtctgcgcccagatctctcacaacatctgagatcagccacaacagtatcaagctcacg
tgggaaccagttgaaggggccacgcaatatcttatcctgtcttcctcaacacccaacggc
gccgaagatgatacgaaagagctgaaagtaaaagacccggaagtctggatcaggggcctg
actcccagcactgaatactcgctagcagtttatgccatgtatggagaagatgctagcaac
ccagcaagtattcaagaaactactttggccctgagccctccaagatatttgcatttctcc
aacatcagccatatgtcggtccatgtcaattgggaggcagcttcacaagccgtgaaaagt
caccgagttatgtattcctccagcagaggaagcaacgtaggtgagatggaggtccctgga
aatgcctcatttgctgtgctgaagcccctctcctcactgacccaatattttgtccgcgtg
gtctccgtttatgatgaaggcaactcatttccaacaatgggcaattttacgacattaaag
gtgcccccaccgagccagctgaaggtcaccgaactctccagaagtgaggtccaactggaa
tgggaagcatccgtggcttctgatgtggttctttaccagatcaaatggaacgtgcttgga
gaagacacagaagaggagatatccgttgctggaaacttggcatcttccattttgcctggt
ttgaaagaaaacactgaatataaaatatccatctgggcgtactacaaagacggagctcaa
agtgataccgtttccatttggcacagaatctctgccaagaacccacccacaaatctctat
gtggattcagagacccccagcagccttcgggttcactggactccccctgatgcagcagtt
cagcactataggatcagctacagtccagaacggagtcacagcaagcagcaggaaacgatc
acagtctctggcaggatccagtccattgttctccattctctcctgcctgctagagtttat
acagtgactgtaattgcagtctacatttcaggagagagcgaccctgtatctgtcattggc
cggacagctaccgtcttggctcgattgcccaccatgaaagaatcccaattcttcaaaaca
gagggctgcccttcgcttcgctctgtggatggccccacacaaggttttgacatgatggag
gcctttggattgatggacaaggagtatgcctccatcaagggggttgctatggaaccttac
atcttcttaggcactcgcacctacacgctctacagagatatccaactaacgcggaaaaca
agtgaggtattaccttttggacttccaatggaatacaccattacttttctactccgcctt
ctaccagaaagtccccgagaagccttttctatctggcagataacagatgaggacttccaa
ccgcttctcagcgtcattcttgatcctcttaagaaatcactggtatatttctatcgggac
catgaagccgatgtagaagagatcacctttgatcaacaggaagtgaagaagatattctat
ggaagctttcataaggtccatgtgtcggtgagccatggctgggtcagactctacgttgac
tgcaagaaaataggagaaaagattcttgggaaatcagagatcctttcgacggcaggcttt
atcacgctggggaagctgacaagaacacgaggaccacgaagtggatcagccatgctccag
ttgcagtcactgcaaattgtgtgcagcacttcgtggccggaagaggaccgatgttgtgag
ataccagctttgagagatgaagaagcttgtcccagtttgcttccttcctgcagctgcaca
tctgacgttccaggacttccggggcccccaggccctccgggcaatcctgggcgaaggggc
atccagggagaacagggggagcctggtcccaagggggaaccaggtcctccgggccaagct
ggaccaaaggggccaggagggcaccaagggacccccggttcacaaggattaaccgtgcaa
ggccctattggcccacccggtcttaagggtgataaaggggacagcggaagtccaggaata
cagggtctgatgggtccccagggagcagcaggtaaagacggccctcaaggatcaaagggt
gttcgaggactcgaaggagcagctggaccaccaggacctccaggaccacggggattccaa
ggtttagcagggacctggggtaaccctggagacagaggccccccaggagaagtcggaccc
acggggctgcctggtccaaaaggagaaaggggagagaaaggtgaagcacagtccctatct
accatttaccacctggtaaaccaagcttgcgagcgtctgatccagtcgcatgtgttaaag
ttcgacacgtttgttcacgaacaatcgcggaaacctgtccccatctgggaggaggaaccg
aaggctggagagcctggaccaaccggtctcaccgggttccctggagcgaaaggtgaaaga
ggagaaatcgggatgcccggacttccaggaagggatggatatccaggagaaagaggtgtc
cctgggcccaagggagaaaaaggcgcttttggacaaagggtggaaggttctgaaggacca
agtggtcaagcaggccctccaggagaaatggtggttggccaacaaggctccaaaggacct
ccaggtagtattggtccatctggatttcctggggctcctggccagcctggagttcctggt
cctgcaggtagatgtcttcctacaggatgccacagggatagtagaagagatgccgggctg
atcccatga
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integrated database retrieval system
