Ahaetulla prasina (Asian vine snake): 131194917
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Entry
131194917 CDS
T09329
Symbol
PABPC1L
Name
(RefSeq) polyadenylate-binding protein 1-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
apri
Ahaetulla prasina (Asian vine snake)
Pathway
apri03015
mRNA surveillance pathway
apri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apri00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
131194917 (PABPC1L)
09123 Folding, sorting and degradation
03018 RNA degradation
131194917 (PABPC1L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apri03019
]
131194917 (PABPC1L)
03041 Spliceosome [BR:
apri03041
]
131194917 (PABPC1L)
Messenger RNA biogenesis [BR:
apri03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
131194917 (PABPC1L)
mRNA cycle factors
Stress granule specific factors
131194917 (PABPC1L)
Spliceosome [BR:
apri03041
]
Complex C
Other components
Complex C specific factors
131194917 (PABPC1L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_Nup35
RRM_10
RRM_occluded
ATP-grasp_2
RRM_3
RRM_RdRP1_2
DUF6262
PH_35
Motif
Other DBs
NCBI-GeneID:
131194917
NCBI-ProteinID:
XP_058032486
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All DBs
Position
3:complement(201119982..201152208)
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AA seq
635 aa
AA seq
DB search
MNASGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGSIMSIRVCRDVATRRSLGYAYLNFQ
QPADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNLDDSIDNKALYDTFS
AFGNILSCKVVCDENGSRGYGFVHFETHEAAHRAINTMNGMLLNDRKVFVGHFKSRRERE
AEYGAKAMEFTNVYIKNFGEDMTDERLQEIFSKFGKTLSVKVMIDSSGRSKGFGFVNFEK
HQDAQKAVEQMDGSEINDRTVFVGRAQKRMERQNELKRKFEQMKQERMNRYQGVNLYVKN
LDDGIDDEHLRKEFSPYGTITSAKVMMDGGHSKGFGFVCFSSPEEATKAVTEMNGRIVST
KPLYVALAQRKEERKAILTNQYMQRLATMRAFPGPLLCSFHPSTGYFLPSIPQPQTRATF
YSPSPVAPVRPAPRWNTQSSRHPSSYHPATPMVRPNGPPRRLLSNISTMRQASTQVPRVP
STGQRVVNIGTQTISARASSSPTFSRGISQYKYSSAVRNVQPLDAVTSLPMQQAVEPIIH
IHGQEPLTTSVLAAAPPQEQKQILGERLYPLIHARHPTLAGKITGMLLEIDNSDLLLMLE
SPESLQSKIEEAVAVLQAHQISEATHKSSSTAFHP
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgaatgctagtggcccaggatatcctctagcctctctctatgtgggtgacctgcatcca
gatgttaccgaagccatgttgtacgagaagttctcacctgctggatccatcatgtccatc
agagtttgtcgagatgttgccacacggcgatctctaggttatgcttacctaaattttcaa
cagcctgctgatgctgaacgggctttggacaccatgaattttgaagttataaaaggtcgg
cccattcgtatcatgtggtcccagcgagatcccggactcagaaaatcaggtgtcgggaat
attttcatcaagaatctggatgattccattgataataaagccttatatgatacattctca
gcttttggaaatattctttcttgcaaagttgtttgtgatgagaatggatctaggggttat
ggcttcgtccattttgagacccacgaggcagcacatagagcaattaatacaatgaatgga
atgctgctaaatgatcgcaaggtatttgttggccactttaagtcccgccgagagcgagaa
gcagaatatggagccaaagcaatggaattcactaatgtctacatcaaaaactttggagag
gacatgactgacgagaggttgcaagaaatattctcaaaatttggaaaaactttgagtgtc
aaggtcatgatagatagttctggccgctcaaaaggatttggttttgtcaattttgagaag
catcaagatgctcagaaggccgttgagcagatggatggaagtgagatcaatgaccgaaca
gtatttgttggcagagcccaaaaaaggatggagcgacaaaatgagctgaagcgtaaattt
gaacaaatgaagcaggaaagaatgaaccgatatcagggagtaaacttgtatgtaaagaac
ttggacgatggcattgatgatgagcatttgagaaaagaattctcaccctatggaaccatc
acaagtgccaaggtaatgatggatggcggacacagcaaaggttttgggtttgtatgtttt
tcttccccagaagaagcgaccaaggctgtgactgaaatgaatggacgcatcgtcagcact
aagcctttgtatgtggcccttgcccaacggaaagaggagagaaaagccattctcaccaac
caatacatgcagaggctggccaccatgagggcctttcctggtccactcctgtgttctttc
cacccttctacaggctacttcctgccctcaattccacagccacaaactagagctactttc
tacagtccaagcccagttgccccggtccgcccagcccctcgctggaacactcagtcctcc
agacatccttcatcctatcatccagctactccaatggtgaggcctaatggaccccctcgc
cgcctcctctccaacatcagcactatgagacaagcctccactcaagttcccagagtacca
tccactggccagagagtggtcaacattggaacgcagaccattagtgcaagagcctcctct
tctccaactttctcacgtggtatctcgcagtacaagtattcttcagctgtgaggaatgtc
cagcctttggacgcagtaacatctctgccaatgcaacaggctgtagaaccaatcattcat
atccatggacaggagcctttgaccacatccgtgttggctgcagcccctcctcaagaacag
aaacaaatacttggtgaacgtctctatcctctaattcatgcaaggcaccccacccttgct
gggaagattacaggcatgctgttggagatagataattctgatctgctacttatgctggag
tcaccagaatcccttcagtctaagatcgaggaagcagtagctgtgcttcaagcccatcag
atctctgaagcaacccacaagagcagttcaacggcatttcacccttga
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