Ahaetulla prasina (Asian vine snake): 131195220
Help
Entry
131195220 CDS
T09329
Symbol
SMG7
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7 isoform X1
KO
K14409
protein SMG7
Organism
apri
Ahaetulla prasina (Asian vine snake)
Pathway
apri03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
apri00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
131195220 (SMG7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apri03019
]
131195220 (SMG7)
Messenger RNA biogenesis [BR:
apri03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
131195220 (SMG7)
mRNA cycle factors
Common to processing body (P body) and stress granule
131195220 (SMG7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
Motif
Other DBs
NCBI-GeneID:
131195220
NCBI-ProteinID:
XP_058032957
LinkDB
All DBs
Position
3:127026056..127088403
Genome browser
AA seq
1193 aa
AA seq
DB search
MSLLCAQYLRQAEVLKADMTDSKLGPAEAWTSRQALQDLYQKMLVTDLEYALDKKVEQDL
WNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCR
VKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQ
LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEV
KIQWGISDFIKAFIKFHGHVYLSKNLEKLNPLREKLEEQFKRLLFQKTFNSQQLVHITVI
NLFQLHHLRDFSNETEQHSYSQDEQLCWTQLLALFMSFLGILCKCPLQNDYQEESCGSYP
LPALKVSMDWLKLRPSVFQETVVDERQYVWPWLISLLNSFQPHEEDLSCPNATPLPEEFE
LQGFLALRPSFRNLDFSKGHQGITGDKEGQHYRIRQQRLIFTGKWIADNQPRLIQCENEV
GKLMFLTEIPELLLEEHNESKQSHVLQEASEPQFVDGSPGLKSVLSTSRNLSSSSDTGDK
PMVTFKENIKPREINREQGRNYLTKEIGRERRDYNKGITANKNDGKKDINNKRKNEIKKC
GMDKSQETGKQNVAVQVKSQTELRKTPVSEVRKTPVTQSPNQASNSQFIPIHHPGAFPPL
PSRPGFPPPAYVIPPPVAFSMSSGYTFPGGVSVPGTFLQPAAHSPAGNQVQAGKQSHIPY
SQQRPSGPGPMNQGPQQTPSPSQQPLASIPAQATTPSASQLQVQALAQQQQQQQSPTKAV
QALGKSPPHHSGFQQYPQGDSSKQLWNPSQVQGPLGKIMPVKQPYYLQGQDPVKLFEHSL
QPPLLQQQQPLEKKMKPFPMEPYNQNPSEVKMPEFYWDSYGMADNRVVMAQQQANLDRRG
KRQQGIFRPEQDPMPRMGFEDPKSSPLLPPDLLKSLAALEEEEELIFSNPPDLYPALLGP
LASLPGRSLFKSLLEKPSDLMSQSPSFLSLTGFSLNQERYPNSMFNEVYGKNLNASTKAE
VTPSVAHQETSLYSLFEGTPWSPSLPASSDHSTPASQSPHSSNPSSLPSSPPTHNHNSVP
FSNFGPIGTPDNRDRRITDRWKTDKPAMGGFGLDYLPATSSSSESSWHPTSTHSGPWSAH
GPSIEDSSAVLMESLKSIWSSSMMHPGPSALEQLLMQQKQKQQRGQGAMNPPH
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgctttgcgctcagtatctccggcaggcagaagtcctgaaggctgacatgaca
gattcgaagctgggaccagccgaagcctggacatctcgacaagctttacaggacttatac
cagaaaatgttagtaacagatttggagtatgcattggataaaaaagtggaacaggatctg
tggaatcatgcctttaagaatcagatcacaactctacagggtcaagcaaaaaaccgagca
aatccaaaccggagtgaagttcaggcaaacctctctctctttctagaagcagctagtggc
ttctatacgcagctactgcaggagctgtgcacagtatttaatgtggatttgccctgccgt
gtgaagtcctctcagttgggaattatcagcaataaacagacgcacaccagcgccatagtg
aagccacaatctagctcctgctcatatatatgccagcactgccttgtccaccttggagac
atcgctcgctacagaaatcagaccagccaggctgaatcctattataggcatgcagctcag
cttgtcccctccaatggtcagccttataatcagctggctattttagcatcctccaaagga
gatcacctgaccacaattttctactattgcagaagcattgctgtgaaattccctttccca
gctgcttctactaacctacaaaaagcactttctaaagcactggaaagtcgtgatgaggtg
aaaattcagtggggaatatctgatttcattaaggcatttataaaattccatggccatgta
tatctgagtaagaatttggagaaattgaatcctcttcgtgagaaattagaagagcaattc
aagaggttgctgttccaaaaaaccttcaattctcaacagcttgtccatattactgtcatc
aacctgtttcagttacaccatttacgggattttagcaatgagactgaacagcatagttac
agtcaggatgaacagctatgctggacacaattactggcactcttcatgtcttttcttgga
attttgtgcaagtgcccacttcagaatgattaccaagaagaatcttgcggttcttatccc
cttcctgcactcaaagtctcaatggactggctgaaacttagacccagtgtttttcaggag
actgtggttgatgaaaggcaatatgtttggccttggctgatttctcttctaaacagtttt
cagcctcatgaagaagacctctcctgccctaatgccacccctcttccagaagagtttgag
ctgcagggattcttagctctgagaccctcatttaggaacttggatttctctaaaggccat
cagggaattactggagacaaagaaggacaacattaccgtataaggcaacaacgcctgatc
ttcacaggaaaatggatcgctgacaatcagccaaggttgatccaatgtgaaaatgaggtt
ggcaaactcatgtttttgacggagatcccagaactgttactggaggaacataatgaatcc
aaacagagtcatgtcctgcaggaagcatcagagccacagtttgtagatgggagcccagga
cttaagtccgtgctatctacaagtcgaaacctgagcagcagctctgatacaggagataag
ccaatggtgacattcaaagaaaacattaaaccacgagaaataaacagagagcaaggccga
aactatctgaccaaggaaataggaagggaaagaagagattataacaaaggaataacagcc
aataaaaatgatggaaagaaggacatcaacaacaaaaggaagaatgagattaagaaatgt
ggcatggacaagagtcaagaaacagggaagcagaatgtagcagtacaggtaaaatcccag
actgagttgaggaagactccagtatctgaagtcagaaaaacaccagtaactcagtctcca
aatcaggccagcaactcccagttcatccccatccatcacccaggagctttccctcctctt
cccagccggccaggcttcccacctcctgcctacgttattcctcctcctgtggctttctct
atgagctcaggatatactttcccaggtggtgtttctgtcccaggaacctttcttcagcct
gcagctcattcacctgcaggaaatcaggtgcaagctgggaagcaatcccacattccttac
agccagcagcggccctctggaccaggcccaatgaaccagggacctcaacagactccatcc
ccttctcagcagccccttgcatccataccagctcaggcaacaaccccatctgcaagccag
ctacaggtccaggctcttgcccagcagcagcagcagcaacagtccccaacaaaagctgtg
caggcattaggaaagagtcctccacaccattctggattccagcagtatccccagggagac
tcctccaagcagctctggaacccctctcaggttcaaggcccattggggaagatcatgcct
gtgaagcagccgtactatcttcagggccaggatcccgtgaaactctttgaacactccttg
cagcctccccttctgcaacaacagcagcctctggagaagaaaatgaagcctttccctatg
gagccatataaccagaatccctcagaggtcaagatgccagaattttactgggactcctat
ggtatggctgataaccgtgttgtgatggcacaacaacaagccaacctggaccgcagaggg
aaacgtcagcaaggaatcttccgcccagagcaggacccaatgccgaggatgggttttgag
gaccccaagagctcccctctgcttcctccggacctgttaaagagtttggctgccttggag
gaggaggaagagctgattttctctaatcctcctgatctttacccagcactgctggggcct
ctcgcctctcttcctggacgaagcctctttaaatcactgttggagaaaccatcagatctg
atgtcacagtcaccatctttcctatcgctcacaggcttctcccttaatcaggaaagatat
ccaaacagcatgttcaatgaagtttatgggaaaaacctcaatgccagcacaaaagccgag
gttacaccatcagtagctcaccaggagacttcactttattctctttttgaaggtactcca
tggtctccatctcttccagccagctcagatcattcaacaccagccagccagtctcctcac
tcctccaacccaagcagcttgccaagctctcctccaactcacaaccataattcggttcca
ttttccaactttgggcccattggaacaccagacaacagggatagaaggataacagatcgg
tggaagacagataagccagcaatgggaggctttggcctggactatctcccagcaacatca
tcctcttcagagagtagctggcacccaaccagcacccacagcggtccctggtcagcccat
ggcccatccatagaggattcgtcagctgtgcttatggaaagtctgaagtctatctggtcc
agttctatgatgcatcctggaccttctgctctggagcaactgttgatgcagcagaagcaa
aagcagcaacgtgggcaaggtgccatgaatccaccacactga
DBGET
integrated database retrieval system
