Ahaetulla prasina (Asian vine snake): 131197139
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Entry
131197139 CDS
T09329
Symbol
POLR2A
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
apri
Ahaetulla prasina (Asian vine snake)
Pathway
apri03020
RNA polymerase
apri03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
apri00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
131197139 (POLR2A)
09124 Replication and repair
03420 Nucleotide excision repair
131197139 (POLR2A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
apri03021
]
131197139 (POLR2A)
03400 DNA repair and recombination proteins [BR:
apri03400
]
131197139 (POLR2A)
Enzymes [BR:
apri01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
131197139 (POLR2A)
Transcription machinery [BR:
apri03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
131197139 (POLR2A)
DNA repair and recombination proteins [BR:
apri03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
131197139 (POLR2A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
131197139
NCBI-ProteinID:
XP_058036796
LinkDB
All DBs
Position
4:2206988..2250775
Genome browser
AA seq
1962 aa
AA seq
DB search
MHGGAPSGDSACPLRTIKRVQFGILSPDEMKRMSVTEAGIKYPETTEGGRPKLGGLMDPR
QGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLGKTMKVLRCVCFFCSKLLVDS
NNPKIKDILTKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGH
GGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFILGMDPK
YARPEWMICTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAH
VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF
SARTVITPDPNLSIDQVGVPRSIAANMTFAEIVAPFNIDRLQELVSRGNSQYPGAKYIIR
HNGDRIDLRFHPKSSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWST
FRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT
LTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHIN
CVRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMG
HDVTRLFYSNIQTVINNWLLIEGHTIGIGDSIADAKTYQDIQNTIKKAKQDVIEVIEKAH
NNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINI
SQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAM
GGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESV
EFQNLATLKPSNKAFEKKFKFDYTNERALRRTLQEEMVKDILSNAHIQNELEREFEKMKE
DRDVLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINTRLPSDLHPIKVVEGVKELSKKLV
IVNGDDPLSKQAQENATLLFNIHLRSTLCSRRMIEEFRLSGEAFDWLLGEIESKFNQAIA
HPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTV
FLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPD
FDVTRISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRI
MNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKII
ITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERE
LYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLME
AAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKFGMEIPTNITGLGVGGPTGM
FFGSAPSPMGGVSPATTPWNQGATPAYGAWSPSVGSGMTPGAASFSPSAASDASGYSPGY
SPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGVYTPQSPSYSPTSPS
YSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY
SPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTS
PSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYS
PTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSP
TYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDSDEEN
NT seq
5889 nt
NT seq
+upstream
nt +downstream
nt
atgcacgggggcgcgccctccggggacagcgcgtgcccgctgcgcaccatcaagcgggtg
caattcggcatcctcagcccggatgagatgaaacggatgtcggtgaccgaagcgggcatc
aaataccctgagaccacagaaggcggtcgccccaaacttggagggctgatggatcctcgc
cagggagtcatcgaaaggaccgggcggtgccagacgtgcgcaggcaacatgaccgaatgt
cctggccattttggccacatcgaactggccaagccggttttccacgtcggctttttagga
aaaaccatgaaagtccttcgctgtgtttgtttcttctgctccaaactgctggtcgactcg
aacaatccgaagatcaaggatatcttgaccaagtcgaaaggccagccgaagaagcgctta
acccatgtctacgatctctgcaaaggcaagaacatttgcgagggaggagaggagatggat
aacaaatttggggtggagcagccggaaggcgacgaggacctcaccaaggaaaagggccac
gggggctgcgggcgctaccagccgaggatccgccgctcgggcctggagctgtacgccgag
tggaagcacgtgaacgaggactcgcaagagaagaagatcctgctcagccccgaacgggtc
cacgagatcttcaagcggatctcggacgaggaatgcttcatcctgggcatggatcccaaa
tacgcccggccggaatggatgatatgcactgtgctccccgtccctccgctgtccgtcagg
ccggccgtcgtcatgcaaggctcggctaggaatcaggacgacttgactcacaagctggcc
gacattgtcaaaatcaacaaccagttgcggcggaacgagcagaacggggcggccgctcac
gtcattgcggaagatgtcaagctcctgcagttccacgtggccaccatggtggacaatgaa
ctgcctgggctgccccgggcgatgcaaaaatccggccggcctctgaagtccttgaaacag
cgtctgaaagggaaggaaggccgcgtgcgagggaatctgatgggcaaacgggtggatttc
tccgcccggacggtcatcacgcccgatcccaacctctccatcgatcaggtgggcgtgcca
cgctccatcgccgccaacatgaccttcgccgagatcgtggcgcctttcaacatcgacaga
ctccaggagctggtgagccgagggaacagtcagtatcccggagccaaatacatcatccgg
cacaacggagacaggattgatctccgcttccacccgaagtccagcgaccttcacctgcag
attgggtacaaggtggagcgacacatgtgcgacggagacattgtcattttcaaccgacaa
cccactctgcacaaaatgtccatgatgggccaccgagtccgaatcctgccctggtccacc
ttccggctcaatctcagtgtgaccaccccatacaacgctgacttcgacggcgacgaaatg
aacctccaccttccccaatcgttggagacccgggcggagatccaagaactggccatggtg
ccccgtatgattgtcacgccccagtccaacaggcctgtcatgggcatcgtgcaagacacg
ctgacggccgtccgcaagttcaccaagagggatgtttttctggagaggggggaagtgatg
aacctgctgatgttcctctccacctgggatggcaaagtgccccaaccggccatcctgaag
cctcgcccgctctggaccgggaagcagatcttctccctcatcatcccgggacacatcaac
tgtgtccggacgcacagcacccacccggacgatgaagacagcggcccctacaagcacatc
tcgccgggagacaccaaggtcattgtggagaacggagagctgatcatggggatcctctgc
aagaagtccctgggcacttcggccggctccctggtccacatctcctacctggagatgggc
cacgacgtcacccgcctcttctacagcaacatccagaccgtcattaacaactggctgctg
atcgaagggcacaccattggtatcggggactccatcgctgatgccaagacctaccaggac
atccaaaacactatcaagaaagccaagcaggatgtgatagaggtcatcgagaaagcccac
aacaacgagctcgagcccacccctggcaacaccctgcgccagacctttgagaaccaggtc
aaccgcatcctgaacgatgcccgagacaagaccggctcctctgcccagaagtccctctcg
gagtacaacaacttcaaatccatggtggtctcgggggccaaaggctccaagatcaacatc
tctcaggtcatcgccgtggtggggcagcagaacgtggaggggaagcggatccccttcggc
ttcaagcatcgcaccctgccccacttcatcaaagacgactacgggccggagagcaggggc
ttcgtggagaattcgtacttggccggactgacccccaccgagttcttcttccacgccatg
ggaggccgagaagggctgatcgacacggccgtcaaaacggccgaaacgggttacatccag
cgtcggctgatcaagtccatggagtcggtcatggtgaagtacgacgccaccgtccgcaac
tccatcaaccaggtggtgcagctgcgttacggcgaggatgggctggccggagagagcgtg
gaattccagaatctggccaccctcaagccttccaacaaagcttttgagaagaagttcaag
ttcgattacaccaacgagcgggctctgcgccgcaccctgcaggaggagatggtgaaggac
atcctcagcaacgcccacatccagaacgaactggagagggagtttgagaagatgaaggag
gaccgggacgtgttgagggtcatcttccccacgggagacagcaaggtcgtcctcccctgc
aacctgctgcgcatgatctggaacgcccagaaaattttccacatcaatacgcgtctcccc
tccgacttgcatcccatcaaagtggtggaaggcgtgaaggagctgagcaagaaactggtg
attgtgaacggcgacgaccctctcagcaagcaggcccaggaaaacgccaccttgctcttc
aacatccacctgcgttccaccctctgcagccgtcgtatgattgaggaattccggctgagc
ggagaagccttcgactggctgctgggagaaatcgaatccaagttcaaccaggccattgcc
catcctggtgagatggtgggggccttggccgcccagtccctgggagaacctgccacccag
atgaccctcaacactttccactatgctggggtctctgccaaaaacgtgaccctgggggtg
cctcggctgaaagaactgatcaacatttccaaaaaacccaagaccccttctctgacggtc
ttcctcctgggacaatccgcccgggacgctgagagggccaaggacatcctttgccgcttg
gagcataccacccttcggaaggtgacggccaacacggccatctactacgaccccaaccct
cagaacaccgtggtggccgaggaccaggaatgggtgaacgtctactatgagatgcccgac
ttcgacgtcacccgcatctccccttggctgctgagggtggagctggaccgcaaacacatg
acagaccgaaaactcaccatggagcagatcgccgagaagatcaacgctgggtttggagat
gacctcaactgcatcttcaacgacgacaacgctgagaagctggtgctgcgcattcgaatc
atgaacagcgacgagaacaagatgcaggaggaggaagaggtggtggataagatggacgac
gacgttttcctgcgctgcatcgaatccaacatgctcacggacatgacccttcaaggcatt
gagcaaatcagcaaggtgtacatgcacctgccccagaccgacaacaagaagaaaatcata
atcacagaagacggcgagttcaaagccctccaggagtggatcctggaaaccgacggcgtc
agcctcatgcgcgtgctgagcgagaaagacgtggaccccgtgcgcaccacctccaacgac
atcgtggagattttcacggtgctgggaattgaggctgtgaggaaggccctggaacgggag
ctgtaccacgtcatctccttcgacggctcctacgtcaactaccgccacttggccctgctc
tgcgacaccatgacctgtcgcgggcacttgatggccatcacgcgtcacggcgtcaaccgc
caggacacggggccgctcatgaaatgctccttcgaagagacggttgatgtcttgatggag
gcggccgcccacggcgagagcgaccccatgaaaggggtctcggaaaacatcatgctgggc
cagctggcccctgcgggcaccggttgcttcgacctgcttttggacgctgaaaaatgcaaa
tttggcatggagatccccaccaacatcaccgggctgggtgtcggtggccctacgggcatg
ttcttcggctctgcgcccagccccatgggcggggtgtcccctgccacaaccccgtggaac
caaggtgccacgccagcctacggcgcctggtcgcccagtgtggggagcggaatgaccccc
ggggccgccagtttctcccccagcgcggcttccgatgccagcggttacagccctgggtat
tcccctgcctggtcgcccaccccaggctccccaggctctccgggaccttccagcccttat
attccgtctccagggggcgccatgtctcccagctactccccaacctctcccgcctacgag
ccacgctcgcccggggtgtacaccccgcaaagccccagctacagccccacctccccttcc
tacagccccacctctccttcgtactctccaactagcccgaattatagtcccaccagcccc
agctacagccccacctcgccaagttactctccgacatcacccagctacagcccgacgtcg
cccagttacagcccgaccagccccagctacagcccgacgtcacctagttattctccaacc
agccccagctacagcccgacgtcacccagctacagcccgacgtcgcccagctacagcccg
accagtcctagctacagcccaacgtctcccagctacagcccgaccagtcctagttacagc
ccgacgtctcccagctacagcccaacgtctcccagctacagcccgacctcccctagctac
agcccaaccagccccaattacagcccaacctctccaaactacaccccaacttctcccagc
tacagcccaacttcgcccagctacagcccgacctctcctaattacaccccgacgtctcca
aactacagcccaacatctcccagttactccccgaccagcccttcctacagtcccacctcg
cccagctactccccctccagcccccgctacaccccacagtctcccacttacaccccctcg
tcgcctagctacagccccagctcgcccagctacagcccgaccagccccaagtacaccccg
accagcccgtcctacagccccagctctccggaatacaccccgaccagccccaagtacagc
ccgaccagccccaagtacagcccgacttcgcccacctacagcccgactacgccgaaatac
agcccgaccagccccacctactcgccgacgtcgcccgtctacaccccgacgtcgcccaag
tacagcccgacgtcgcccacttactcgcccacctcccccaagtacagcccgacctcgccc
acctattcgcccacctcccccaaaggctccacctactccccaacctcccctggctacagc
cccacgtcgccgacctacagcctcaccagcccggccatcagtccagatgacagcgacgaa
gagaactga
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