Ahaetulla prasina (Asian vine snake): 131201689
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Entry
131201689 CDS
T09329
Symbol
CPSF6
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6 isoform X1
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
apri
Ahaetulla prasina (Asian vine snake)
Pathway
apri03015
mRNA surveillance pathway
apri03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
apri00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
131201689 (CPSF6)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
131201689 (CPSF6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apri03019
]
131201689 (CPSF6)
Messenger RNA biogenesis [BR:
apri03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
131201689 (CPSF6)
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SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RSLD_CPSF6
RRM_1
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
131201689
NCBI-ProteinID:
XP_058045762
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Position
7:49073388..49106892
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AA seq
602 aa
AA seq
DB search
MADGVDHIDIYADVGEEFNQEAEYGGHDQIDLYDDVISPSANNGDAPEDRDYMDSLPPSV
GDDVGKGSAPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRAN
GQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPCNKQFLSQFELQSRKNLCGSLK
NRLMKSKEVLHLSTQSGQMSGEGKAGPPGGSSRATFPPSNRGRGRFPGALPGGDRFPGPA
GPGGPPPPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLTGPPNRGDRPPPPVLFPG
QPFGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPP
HLPGPPPGAPPPAPHVNPAFFPPPANSGIPTSDSRGPPPSDPYGRPPPYDRGDYGPPGRR
FTGNNMSIREQLHMPLYWRQTKNNTQNAGREIDAARTPLSEAEFEEIMNRNRAISSSAIS
RAVSDASAAEYGSAIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGIESKSYGSGSR
RRERSRERDHSRSREKSRRHKSRSRDRHDDYYRERSRERERHRDRDRDRDRERDREREYR
HR
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggcgtggaccacatagacatttacgccgatgtaggagaggagtttaaccag
gaggctgaatatggtgggcatgatcagatagatctgtatgacgacgtcatctctccatct
gccaataacggcgatgcaccagaggatcgtgattatatggactctcttccaccatctgtt
ggagatgatgtgggcaaaggatcagcaccaaatgttgtctatacatatacagggaagaga
attgcattatatattgggaatcttacttggtggaccacagatgaagatttaactgaagca
gttcattcacttggtgtaaatgatattttggagataaaattttttgaaaaccgtgctaat
ggccagtctaagggatttgctcttgtgggtgtgggatctgaggcatcttccaaaaagctg
atggacctgttgcccaaaagagagttacatggtcaaaatcctgttgtaactccttgtaat
aagcaatttctgagtcaatttgaattgcaatcaagaaaaaacttatgcggaagtctgaaa
aacagattaatgaagagcaaagaggtgctgcatttgtctacacaatcaggccagatgtct
ggtgaaggaaaagctggtcccccaggaggcagttcacgagcaacttttcctccaagtaac
agagggaggggccgttttccaggtgcccttcccggaggggacagatttccgggaccagct
ggacccggagggccccctccaccttttccagctggacagactcctccacgtccacctcta
ggtcctccgggcccaccaggcccaccaggtcctcctccacctggccaggttctgcctcct
ccactaactggtcctcctaatcgtggtgaccgtccccctcctccagttctgtttccagga
caaccgtttggccaacctccattgggtccacttccacctggtcctccacctccagtacca
ggctatggtcctccaccaggtcctccacccccacagcaaggtcctcctccacctccaggt
cctttcccccctcgtccacctggtcctttaggaccaccccttacactggctcctcctcct
catttacctggaccaccaccaggtgctccccctcctgccccacacgtgaatccagctttc
ttccccccaccagccaacagtggcatacctacatcagacagtcgtggtccaccaccttca
gatccatatggccgacctccaccatatgacagaggtgattatgggccaccaggcaggcgt
ttcactggaaataacatgtccataagagaacaattacatatgccattgtattggagacaa
acgaaaaataatactcaaaacgcagggagagaaatagatgctgcaaggacaccattaagt
gaagcagaatttgaagaaattatgaatagaaatagggctatctctagcagtgccatttca
agagctgtatcagatgcaagtgctgcggaatatggaagtgctatagaaaccttggtgact
gcaatttcattaattaaacagtccaaagtatctgcagatgatcgctgcaaagtacttatt
agctctctgcaagattgtcttcatgggattgaatcaaagtcttacggttctgggtcaaga
agacgtgaacggtcaagggagagagaccatagtagatcaagggagaaaagccggcgccat
aaatctcgtagcagagatcgccatgatgattactaccgggaaagaagccgtgaacgtgag
aggcatcgtgaccgtgatagagaccgtgatagagagcgtgatagagaacgagaatatcgt
catcgttaa
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