Ahaetulla prasina (Asian vine snake): 131204253
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Entry
131204253 CDS
T09329
Symbol
SNRNP40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
KO
K12857
Prp8 binding protein
Organism
apri
Ahaetulla prasina (Asian vine snake)
Pathway
apri03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
apri00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131204253 (SNRNP40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
apri03041
]
131204253 (SNRNP40)
Spliceosome [BR:
apri03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
131204253 (SNRNP40)
Complex C
U5 SnRNP specific factors
131204253 (SNRNP40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_TEP1_2nd
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
EIF3I
WDR55
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_EML
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_SPT8
WD40_MABP1-WDR62_1st
Beta-prop_EIPR1
ANAPC4_WD40
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
WD40_RFWD3
Beta-prop_DCAF4
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Beta-prop_Vps41
eIF2A
Beta-prop_WDR75_2nd
Beta-prop_WDR35_TULP_N
Ge1_WD40
Beta-prop_NWD2_C
Beta-prop_HPS5
Beta-prop_RIG_1st
Beta-prop_IFT140_2nd
Cytochrom_D1
WDR54
WD_LRWD1
Motif
Other DBs
NCBI-GeneID:
131204253
NCBI-ProteinID:
XP_058051283
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All DBs
Position
10:complement(20271162..20284739)
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AA seq
359 aa
AA seq
DB search
MIDPQKRKAPGPDMALVAAAAAAKKPRHELILGPGPGAGQPPPGALLQAGPPRCSSLQAP
IMLLSGHEGEVYCCKFHPNGATLASAGFDRLILLWHVYGDCDNYATLKGHSGAVMELHYN
TDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKL
WDIRKKAAVQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSV
TGLSLSAEGSYLLSNAMDNAVRIWDVRPFAPKERCVKILQGNVHNFEKNLLRCSWSPDGS
KIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPEEPIVLSASSDKRLYMGEIQ
NT seq
1080 nt
NT seq
+upstream
nt +downstream
nt
atgatcgacccgcagaaacggaaggctcccgggccggatatggctttggtggcggcggca
gccgctgctaagaaaccccgccatgagctcatcttggggccgggtcccggagctgggcaa
ccgcctccgggggccttgttgcaggcgggcccaccaagatgttcctcattgcaagcaccc
ataatgttactttctggtcatgaaggagaggtttattgttgcaagtttcatcctaatgga
gccaccttagcctcagctgggtttgacaggttgatactcctatggcacgtatatggtgac
tgtgataattatgccactttgaagggccacagtggcgcagttatggaattacattacaac
acagatggcagcatgctgttctcggcctccacggataaaacagtagcagtatgggatagt
gagacaggagaaagagtgaaaagacttaaaggacacacttcatttgtcaactcctgctac
ccagcaagacgtggacctcagttggtttgcacaggcagtgatgatgggacagtgaagctc
tgggacatcaggaagaaagcagctgttcagacctttcagaacacctatcaagtattagct
gtgaccttcaatgataccagtgatcagataatatctggcggtatcgacaatgatatcaag
gtatgggaccttcgtcagaacaagctaacttacacaatgagggggcatgcggattctgtc
accggtctcagcctaagtgcagagggctcttacttgctttccaatgcaatggacaatgca
gttcgcatctgggatgttcggccctttgctcccaaagaaagatgtgtgaagatcctccaa
gggaatgtgcataattttgagaagaaccttttgcgatgttcctggtccccagatggaagt
aaaatagctgctggatctgcagacaggtttgtttatgtttgggatacaacctctagaaga
atcctctacaaacttccaggccatgcgggttcaataaatgaagtggcatttcatccagaa
gaaccaatagtactttctgcgtctagcgacaaaagactgtatatgggagagatccagtga
DBGET
integrated database retrieval system
