Ahaetulla prasina (Asian vine snake): 131204744
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Entry
131204744 CDS
T09329
Symbol
PABPC4
Name
(RefSeq) polyadenylate-binding protein 4 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
apri
Ahaetulla prasina (Asian vine snake)
Pathway
apri03015
mRNA surveillance pathway
apri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apri00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
131204744 (PABPC4)
09123 Folding, sorting and degradation
03018 RNA degradation
131204744 (PABPC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apri03019
]
131204744 (PABPC4)
03041 Spliceosome [BR:
apri03041
]
131204744 (PABPC4)
Messenger RNA biogenesis [BR:
apri03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
131204744 (PABPC4)
mRNA cycle factors
Stress granule specific factors
131204744 (PABPC4)
Spliceosome [BR:
apri03041
]
Complex C
Other components
Complex C specific factors
131204744 (PABPC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_occluded
RBD_RDR6
RRM_10
RRM_7
RRM_3
POP1_C
Motif
Other DBs
NCBI-GeneID:
131204744
NCBI-ProteinID:
XP_058052263
LinkDB
All DBs
Position
10:complement(3206126..3235981)
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AA seq
635 aa
AA seq
DB search
MNAAAAAAAGSSYPMASLYVGDLHPEVTEALLYEKFSPAGPVLSIRVCRDMITRRSLGYA
YVNFQQPGDAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAL
YDTFSAFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKS
HKEREAELGAKAKEFTNVYIKNFGDEMDDERLKDLFSNYGKTLSVKVMTDPAGKSKGFGF
VSFEKHEEANKAVEEMNGKDINGKIVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVN
LYIKNLDDTTDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNG
RIVGSKPLYVALAQRKEERKAHLTNQYLQRIAGMRALPANTIVSQFQPASGGYFMPAVPQ
AQNRPTYYAPNQMTQMRPSPRWQPGGRPQGFQGMPNSMRQSGPRQTLRHLAPTNTAQVSR
GLPGAPQRIGVAATAPNLAPRPPVATQAPRAVPPYKYAAGIHSPHLAVQPLQAPQPAVHV
QGQEPLMASMLAAAPPQEQKQMLGERLFPLIQAMHLSLAGKITGMLLEIDNSELLHMLES
PESLRSKVEEAVAVLQAHQAKKEAAQKVGIVTATS
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgaacgccgccgccgccgccgctgccgggagcagctacccgatggcgtcgctgtacgtg
ggggacctgcaccccgaggtgacggaggcgctgctctacgagaagttcagccccgccggg
cccgtcctctccatccgcgtctgcagggacatgatcacccggcgctcgctgggctacgcc
tacgtcaacttccagcagcccggcgacgctgagcgagccctggacaccatgaactttgat
gtcatcaaaggcaagcccatccgcatcatgtggtctcagcgggacccctctttgaggaaa
tcgggcgtagggaatgtcttcattaagaacctggataaatccatagacaacaaagcactt
tatgacacgttctctgcttttgggaatattctttcttgcaaggtggtgtgtgatgagaat
ggctccaagggctatgcttttgtgcactttgagacacaagatgctgcggaccgcgccatc
gagaagatgaacggcatgctgctgaacgaccgcaaagtatttgttggccgatttaaatcc
cataaagaacgtgaggcagagttgggagccaaagccaaagagttcaccaacgtctatatt
aaaaactttggggatgagatggatgatgagcggctgaaggatctcttcagcaactacggt
aagaccctcagtgttaaagtgatgactgatccggctgggaaatccaaaggttttggcttc
gtgagttttgaaaagcatgaagaggccaacaaggcagtcgaagaaatgaatggaaaagac
atcaatgggaaaattgtgtttgtgggtcgtgcacagaagaaggtagaacggcaggcagag
ctgaaacgcaggtttgagcagctgaagcaagagaggatcagtcgttaccagggagttaat
ctctatatcaagaacctggatgacacaactgatgatgagaagctgagaaaggagttctcg
ccattcgggtctatcacaagtgctaaggtgatgctggaagatggtcgaagcaaaggcttc
ggcttcgtctgcttctcctctccagaagaagccaccaaagccgtaactgagatgaatggg
cgcattgtgggatccaagccactgtatgtggccttggcccagaggaaggaggagcgcaag
gcccacctcaccaaccagtacctgcagcgcatcgctggcatgagagctctgccggcgaac
accattgttagtcaattccagcctgcttctggagggtatttcatgccggctgtgccccag
gctcagaacagacccacgtactatgcccctaaccagatgactcagatgagacccagtcca
cgctggcagccaggcggaaggcctcaaggcttccaaggtatgcccaacagtatgcgccag
tctgggccacggcaaacactacggcatttggctcccacaaatactgctcaagtatcacgt
ggtttgcctggtgctccccagaggattggggttgctgccacagccccaaatctggctcct
cggccacctgtagccacccaagctcccagggctgttccaccatacaaatatgctgcaggc
atccacagcccccacctggcagtccagcctttacaggccccgcaacctgctgttcacgtg
cagggacaagagcctttgatggcatccatgctggctgctgcacctccccaggagcaaaag
caaatgctgggcgaacgtctctttccattgatccaggcaatgcatctcagcctggcaggg
aagatcactgggatgctgctggagatcgataactcggagctgctacacatgctggagtct
ccagaatccctccgttctaaggtggaggaggctgtggcggtgctacaggctcaccaggcg
aagaaggaagctgcccaaaaggtgggcatcgttactgctacctcgtaa
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