Ahaetulla prasina (Asian vine snake): 131204907
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Entry
131204907 CDS
T09329
Symbol
COL4A6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
apri
Ahaetulla prasina (Asian vine snake)
Pathway
apri04510
Focal adhesion
apri04512
ECM-receptor interaction
apri04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
apri00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
131204907 (COL4A6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
131204907 (COL4A6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
131204907 (COL4A6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
apri04147
]
131204907 (COL4A6)
00536 Glycosaminoglycan binding proteins [BR:
apri00536
]
131204907 (COL4A6)
Exosome [BR:
apri04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
131204907 (COL4A6)
Glycosaminoglycan binding proteins [BR:
apri00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
131204907 (COL4A6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
131204907
NCBI-ProteinID:
XP_058052517
LinkDB
All DBs
Position
11:complement(20967387..21167183)
Genome browser
AA seq
1689 aa
AA seq
DB search
MFAGAPVLLIALCLAAHPVRGGGKKFYHGVCGGRDCTAGCKCFPEKGARGQPGPIGNQGS
MGIEGFTGPEGVRGLKGERGVIGPPGAAGTKGDKGPVGVPGFPGIYGVPGHPGQPGPRGL
PGLDGCNGTIGSPGTSGSDGFPGPQGPPGQPGPKGPKGEPVYAPGIFKGVKGERGLPGLD
GAIGPKGFPGRAGPAGPIGLPGFPGPPGFPGFPGSVGSSGLVFHGEQGEKGDVGLPGPAG
PPSSTGTEEFVGLSKGQRGAKGVPGVKGIPGPPGVPGRMGFWSFGEKGEKGVPGLPGPRG
DTGPRGPYGNVGRKGVPGESGFPGWDGSPGGKGEFGDVGPPGPTVIVDINGVVVSGPPGD
PGTPGTPGPRGDEGNIGLPGFPGQSGRPPTFPGLPGSTGVPGIPGFKGDRGDPGRTTVGS
PGLPGKDGDPGLPGAPGLPGASDIIYPAGTIFRGEPGEPGIPGPRGPPGIFGLKGYKGDG
GDCACDGGITRIGLPGEAGSPGQPGRQGDIGPKGPLGDPGDGIPGPPGPPGFLGQSGLPG
LKGQKGEPSSVSGRGPRGDPGDIGLRGPSGQPGTPGRDGIQGVPGQRGPAGDDGFGFPGD
KGFPGLPGVRGKPGDIGLPGIGFPGPNGRFGPTGDPGISGIPGQPGPPGPPGESVPCIIP
GLIGPPGLPGPSGFPGSKGSKGFPGFPGQPGLNGLKGEPGIPGLARFPGMPGFPGPRGDP
GSKGRQGVDGADGLPGPEGCPGLVGPNGSPGDVFGAEPGPQGEPGLPGLPGDNGFPGDFG
FPGTPGLDGKPGLSGRKGGRGEPGLPGFDGLQGPPGPGGPFGIKGKPGPAGTIGLPGSQG
LPGTKGPRGDAGSPGPAGMKGFPGLDGLPGRPGEQGLPGPPGLWGPEGTSGFPGSKGEKG
SVGMVGFPGMPGPPGVPGLDGLKGTSGAPGRNGNPGFSGLPGLKGDRGVRGPPGPPIFRP
PGLSLRFKGNRGDPGLVGQRGFPGPRGEKGAPGIRGQPGLPGRAGSPAREKGLPGDAGFP
GTFGPPGLLGQKGSRGISGFPGMPGGSGAEGIPGSPGAPGITGLRGPKGDRGESRGIPGG
VGPKGQRGDRGFSGIPGVQGTKGDPGYPGGLGLNGQKGAPGNPGQDGPRGFPGSGASRGN
PGFPGNPGQRGAPGFPGAPGTAGPKGFPGFPGLTGLNGLPGTKGSPGKQGLSESGLPGSA
GIPGVKGQRGDPGFQGGAPGLRGPKGPAGEMGLPGSPGFTGVRGPPGISVPSRVPGKPGD
AGRPGEDGLPGFQGPLGPPGPPGPAFNQGDRGNPGPPGPSGFPGLKGNAGIPGLNGFPGA
SGFKGLRGDPGFMGMPGKDGPLGDPGFPGPKGKAGLPGFPGLQGAPGLTQPPKEVRVPPG
LPGLPGNNGNPGLNGDPGFQGQTGPQGPKGKAGIPGQVGYNGLPGPSGVVGDPGSAGTPG
LPGFEGRPGNPGLAGLPGMPGRSVGVGYTLVKHSQSDQIPPCPVGMNKLWEGYSLLYVEG
QEKSHNQDLGFAGSCLPRFSTMPFIYCNIDEVCYYASRNDKSYWLSTTAPIPMMPVSSYQ
IAQYISRCSVCEAPSQAVAVHSQDITIPQCPEGWRSLWIGYSFLMHTATEGGGQSLVSPG
SCLEDFRATPFIECNGARGTCHYFSNKYSFWLTTVEATQQFAVSPISETLKAGQLRTRVG
RCQVCMKNL
NT seq
5070 nt
NT seq
+upstream
nt +downstream
nt
atgttcgccggcgcgcccgtgttgctgatcgccctgtgcctggcagcgcatcccgtccgc
gggggtgggaagaaattttatcatggagtctgtgggggtcgcgattgtacagccggctgc
aagtgcttcccggagaaaggggctcggggtcaaccagggccaattgggaaccaaggatca
atgggcattgaaggctttactggaccagagggagtgagaggactgaaaggagagaggggc
gtaataggacctccaggtgcagctggaacgaagggagacaagggcccagtgggtgttcct
ggattccctggaatttatggagttccgggacaccccggtcagcctggacccagaggtctt
cctggtttagatggctgtaatggtactattggaagtcctggtacctctggatcggatgga
ttccctggtccccaaggaccaccgggtcagcctggtcctaaaggccccaaaggtgaacct
gtctatgccccagggatttttaaaggagtgaagggagaaagaggtcttcctgggctggat
ggtgctattggacctaaaggttttccaggtcgagcaggccctgctggtcccatcgggcta
cctggatttccgggacccccaggattcccaggattcccaggatctgtgggcagcagtggt
ctagttttccatggagaacaaggagaaaaaggagatgtggggctgccaggcccagcggga
cctccatcttccacagggacagaagaattcgttggcttgtccaaaggacagcgaggagca
aagggggttcctggggtcaaaggaattccaggcccaccaggagttcctggacgtatgggt
ttctggagctttggagaaaagggagaaaaaggagtgcctggtttaccaggtcccagggga
gacacgggaccgaggggaccttacggaaacgtaggcagaaagggagttccgggtgaatcg
ggatttcctggttgggatggctctccaggcggaaagggtgaatttggcgatgtgggtcca
ccaggccctacagtaattgttgacataaatggtgttgttgtatcaggtccccctggagac
cctggtacaccaggaacccctggacctagaggagatgagggaaatataggtttgccagga
tttcctgggcaatcgggacgtcctccaacctttccaggtcttccaggttcaaccggagtc
ccagggatcccaggatttaaaggtgaccgaggagacccaggaaggactacagttggatct
ccaggcctacctgggaaagatggagatccagggttacccggagctccagggttaccaggt
gcttcagatataatatacccagcaggtacaatctttagaggagaacctggggagccaggt
atccctggaccaaggggacccccaggaatctttggtttaaaagggtataaaggggatggt
ggtgattgtgcctgtgatggaggaatcacaagaattggcttgccaggagaggcaggcagt
cctggtcaacctggcagacaaggtgatattggaccaaaaggacccttgggggatccagga
gatggtataccaggtccccctggaccaccaggcttcctaggtcaatctggtcttccaggc
cttaaaggacaaaaaggggaaccatcttcagtctcaggcagaggacctcgaggagatcca
ggggatattggactcaggggtccttcagggcaacctggaactcctggtagggatggcatt
caaggtgtcccaggtcaacgtggtcctgcgggtgatgatggatttggcttcccaggggac
aaaggtttccctggattacctggcgtaagggggaagcctggtgacattggcctacctggc
attggttttccggggccaaatggacgttttggacctacaggtgatccagggatcagtggc
attccaggacaacctggacctccagggccaccaggagaaagtgtaccctgcataatccct
ggactcattggtccacctggacttccgggaccttctgggtttccaggttccaagggtagc
aaaggatttcctggttttccagggcagccaggtttaaatggcttaaaaggagaaccgggc
atacccgggttggctcgattcccaggaatgccagggtttcctggccctcgtggagatcct
ggttcaaaaggacgacaaggagttgatggggcagatgggctgccgggtccggaaggctgt
cccggtttggttggcccaaatggatcccctggtgatgtgtttggggctgaaccagggccc
caaggagaacctgggttacctggcttaccaggagataacggctttcctggagattttggc
tttcctggaacaccaggtttggatgggaagcctggcctgtcaggtagaaaaggaggacgt
ggggagccgggtcttccaggctttgatggacttcaaggaccaccaggaccaggaggtccc
tttggcatcaaaggaaaaccaggtccggcgggaacaatcggccttccaggatcacaagga
cttcctggaacaaaaggaccaagaggagacgctggttcaccaggtcccgccggcatgaaa
ggtttcccaggtctcgatggcctgccaggacggcccggagaacaaggattgcctggacct
ccaggtctctggggcccagaaggaacttcaggttttccaggctcaaaaggtgaaaagggc
tcagtgggcatggtcggttttcctgggatgccggggccacctggggtccctggcttggat
ggcctgaaaggaacttctggtgcaccaggaagaaatggaaaccctggattttctggcttg
cctggcctcaaaggggacagaggtgtccgtggtccaccaggacctcccattttcagacct
ccaggtctgagcctcagattcaaagggaaccgaggagatcctggattggtgggacagaga
ggatttccagggccaagaggagaaaaaggagccccaggtatccgggggcagcctgggctt
ccagggagagctggatcaccagctagagagaaaggactgccgggagacgcaggttttcca
ggaacgtttggtcctcctgggctattgggacaaaagggatctcgtggcatctcggggttt
cctggaatgcctgggggaagtggtgctgaaggtattccaggctcccctggtgccccagga
attaccggattgcgtggtccaaaaggtgaccgtggggaatcccgaggaatcccaggtggt
gtgggacctaagggccaacgaggcgaccgagggttttcaggtataccgggtgtccaagga
acgaaaggtgacccaggatatccaggaggtctcgggctaaatggacagaagggtgcacca
ggtaaccctggacaagatggaccacgaggcttccctggatctggtgcttcaaggggcaac
ccaggttttccaggtaatcctgggcaacgtggagctccaggatttcctggagctcctggc
acggcaggaccaaaaggattcccaggattcccaggactgaccggcttaaatggcttaccg
ggcaccaaagggtctcctggaaaacaaggcctgagtgaaagtggactacctggatcggca
ggaattccaggtgtcaaaggtcaacgaggtgacccaggtttccagggtggagctcctggc
cttcgtggaccaaaaggacctgcaggagaaatgggtcttcctggaagcccaggtttcact
ggtgtgcgaggcccccctggcatctctgtgccttcaagagttcctgggaagcctggtgat
gcgggacgtcctggagaagatgggctgccaggcttccaaggacctcttgggccaccaggg
ccaccgggcccagccttcaatcaaggtgatcgaggtaatccaggcccccccggtccttcg
ggctttccaggcctcaaaggcaatgcaggcatccccggacttaatggattccctggtgca
tcaggtttcaaaggactcagaggggacccaggtttcatgggaatgcctgggaaagatgga
ccgctgggtgatccaggtttccctgggccaaaaggcaaagcaggccttccaggttttcct
gggctgcaaggagctccaggcctaacccaaccaccaaaagaagtcagagttcctcctggc
ttacccggattacctggaaataatggcaaccctggtttaaatggagaccctggcttccaa
gggcaaactggaccacaaggtccaaaaggaaaagcaggcatacctggccaggtgggatat
aatggcttaccaggtccttctggtgtggtaggagacccaggttctgcaggaactccaggg
ctaccaggatttgaaggacgtcctgggaatccaggtctggctgggctgcctgggatgcca
ggtcgcagtgttggggttggctataccttggtgaaacatagccagtcggaccagatccca
ccctgcccagtgggcatgaacaaactctgggaaggctacagtttgctgtatgtggagggc
caggagaagtcccacaatcaagatctgggttttgctggctcctgcctgcctcgcttcagc
accatgccttttatttattgcaacatcgacgaagtgtgctactacgccagccgcaatgat
aaatcctattggctttccaccaccgctccaatacccatgatgcctgtcagcagctaccaa
atcgcccagtacatcagtcgctgctcagtgtgcgaagcaccatcccaagctgtggctgtc
cacagccaggacatcaccatcccgcaatgtcccgaaggctggcgaagtctctggattggc
tactccttcctcatgcatacggctactgaaggcggtggccagtccctggtctctcccgga
tcctgcctagaggacttccgtgccacgcctttcattgagtgcaacggtgcccgaggaacg
tgccattacttttccaacaagtacagcttttggctgaccacggtggaggcaacccaacag
tttgctgtctctcccatctccgaaacgctgaaagcgggccagctccggacacgggtggga
cggtgccaagtctgcatgaaaaatttgtag
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