Acinetobacter proteolyticus: PY247_19290
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Entry
PY247_19290 CDS
T08916
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aprl
Acinetobacter proteolyticus
Pathway
aprl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aprl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PY247_19290 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aprl03400
]
PY247_19290 (mfd)
Enzymes [BR:
aprl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PY247_19290 (mfd)
DNA repair and recombination proteins [BR:
aprl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PY247_19290 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
SNF2-rel_dom
ERCC3_RAD25_C
Glyco_tran_WecG
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WEI18345
LinkDB
All DBs
Position
complement(3931633..3935091)
Genome browser
AA seq
1152 aa
AA seq
DB search
MFQQEISQLNLQQFKAGEKRWVGSLLGSSAALLFKEIATQNSNLYVIIARNNQHLAQLES
ELEFYGITPVIFPDWEILPYDRLSPHQDIVSERLAILSNMPQKGILLVSASTLAQRVAPY
SWVVGEHFDIKVGQKLDLEAQKKQLVQAGYRLVDTVYDHGEFAVRGSIMDIFASGQDQPI
RIDLFDDEIESLKFFDPETQRTTESLKNFTVLPAKEFPLKEGRSTFRDRYAESFPTANPK
KNPIYQDVLEGIATPGLEFYLPLFFDKKVMEAQSMLTTYLPNNCVVITNNEIEDDLINFW
KEVMRRYEDRRHNIDQPILPPEELFLMPNHVLQALNQFPRILASAEALETKAGVLNIAAE
EPPKLAVDPKKEQPFQAVKHYIDQAKHPVLLVAESAGRRETLKDALRGVLGEIQNVDTFA
QFQKDKLQVAITSAPLDRGLLLTNQLSVISENQLYEHRVVQRRRKRQQEVSEEFLIRSLT
ELSIGAPVVHIDHGVGRYAGLITLEIDEQDHEFLQLDYADGAKVYVPVTNLHLISRYSGG
DPDLAPLHKLGTDTWSKAKRKALEQIHDVAAELLHIQARRQSKPGFAFELDHTGYMQFSS
GFAYEETLDQANAIEATLHDMQLAKPMDRLVCGDVGFGKTEVAMRAAFVAVQNNKQVAVL
VPTTLLAQQHYESFKDRFADTAVRIEVLSRFGSNKTHLKTIEDLAEGKVDIVVGTHKILQ
ENIQFKNLGLMIVDEEHRFGVRDKERIKALRADVDMLTLTATPIPRTLNMAFSGMRDLSI
IATPPARRLAVKTFVQEHTDDSVKEAILRELLRGGQVYLLHNEVDTIERAAESIRNLVPE
ARVAVAHGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTIIIERADKLGLAQ
LHQLRGRVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGA
GELLGEQQSGSMQAIGYSLYMEMLEKATKAIQKGKTPNFDAPLSLTAEINLHMPALIPDD
YLGDVHQRLLFYKRISNTDSQEKLDNIRMELIDRFGIPPQPVKQLFSVHQLRLRAEQLGI
TKIDINSNGGYIEFSPDTPVQAISIIQLMQKNPTYYRMEGGQRLKVTVQLAEYDKRIQFI
VDLLNKLLSELN
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaacaagaaatctctcaattaaacttacaacaattcaaagcgggtgaaaaacgc
tgggtcggttccttacttggatcatcagctgcattattatttaaagaaattgccactcaa
aattcgaatctgtatgtgattattgcaaggaataatcaacatcttgcccagcttgaaagt
gagcttgaattttatggcataacgcctgttattttccctgattgggaaattttgccttat
gaccgcttgtctccacaccaagatattgtttcagagcgtttagcaattttatcgaatatg
ccacaaaagggtattttactggtttctgccagcaccttagcgcaacgtgttgcaccttat
tcgtgggttgtgggtgagcactttgatatcaaagtcgggcagaagttagacctcgaagca
caaaagaaacaattggttcaagcaggctatcgtttagttgacacggtttatgatcatggt
gaatttgcagttcgcggtagcatcatggatatttttgcatctggacaagatcaaccgatt
cgaattgatttatttgatgatgaaattgaaagtctaaaattctttgacccagaaacccaa
agaaccacagaatccttaaaaaactttacggtattacctgcaaaagaatttccactcaaa
gaagggcgttctacctttagagaccgttatgcagaaagcttcccaactgcaaatccaaag
aaaaatccgatttatcaggatgtattagagggaattgcaacgccaggtttagagttttat
ttgccattattctttgataagaaggtgatggaagcgcagagtatgctaacaacatactta
ccaaataattgcgttgtcattacaaataatgagattgaagatgatttaatcaacttctgg
aaagaagtgatgcgtcgttatgaagatcgacgtcataacattgatcaacccattctgccg
cctgaagaattatttttaatgcccaaccatgttttacaggcattaaatcaattccctcga
attttggcttcagctgaagctttagagaccaaggcgggtgtacttaatatcgccgctgag
gaaccgcctaaactggcagttgatccgaaaaaggaacaacctttccaagcagtgaagcat
tatatcgaccaagccaagcatcctgttttattggtagcagagagtgcgggccgtcgagaa
acgctaaaagatgcgctgcgtggtgtgttgggtgaaattcaaaatgtagatacttttgct
caattccaaaaagataagttgcaggttgcgattactagtgcacctctggatcgagggctg
ttgctgactaatcagctgtctgtaatttcggaaaatcagctttatgaacaccgtgtggta
caacgccgccgtaaacgccagcaagaagtttctgaagagttcttgattcgtagtttaacc
gaactgagcattggtgcacctgtggtgcatatcgatcatggtgtagggcgttacgcaggt
ttaattactctggaaatcgatgagcaggatcatgagttcttgcagcttgattatgctgat
ggcgctaaagtctatgtgcctgtaaccaatttacatctgattagccgttatagtgggggt
gatcctgatttagctccattacataaattggggacggatacttggagcaaagcgaagcgc
aaagctttggagcaaatccatgatgttgccgcagagttattgcatattcaggcccgtcgt
caatccaaacctggttttgcttttgaactcgatcatacgggatatatgcaattctccagt
ggctttgcctatgaggagactttagatcaagctaacgcaattgaagcaacccttcatgat
atgcagctggctaaaccgatggatcgtttggtatgtggggatgtgggctttggtaaaacc
gaagtggcgatgcgtgcagcattcgttgcggtacaaaataataagcaagttgcagttctg
gtacccacgaccttgttagcacagcaacattatgaatcttttaaagatcgttttgccgat
acagcggtacgcattgaagtattgtcgcgttttggcagcaataagactcacctaaaaacc
attgaagatttggctgaaggcaaagtcgatattgtggtgggaacgcataaaatcctgcaa
gaaaacatccaattcaagaatcttggactcatgattgtcgatgaggaacatcgttttggt
gttcgcgacaaagaacggatcaaagccttacgtgccgatgtggacatgctgaccttaacg
gcgacaccgattccacgtaccttgaatatggcattttctgggatgcgtgatctctcgatt
attgcaacaccgcccgcccgtcggttagccgtgaaaacctttgtgcaagaacacactgat
gattcggtcaaagaagcgattctgcgtgagttattacgtggtggtcaggtgtacttgtta
cacaatgaggtggatactattgaacgtgctgctgaaagcattcgtaatttagtgccagaa
gcacgcgtcgccgtggcgcacgggcagatgcgagaacgtgaactcgagcaggtgatgcag
cagttctaccataaagaatataacgtgttggtttgttcaaccattatcgaaacgggtatt
gatgtgccgaacgccaataccatcattatcgagcgcgcggataaactgggtctggcgcaa
ctgcatcaattgcgtggtcgtgttggacgttcgcatcaccaagcctatgcctatttatta
gtaccgtcgatcaagcatctcaaaggcgatgcagaaaagcgtcttgatgctattcaacgt
gcttccactttaggcgcgggttttatgctggcaaccgaagacttggaaattcgaggcgct
ggtgaattacttggtgaacagcaaagcggttcaatgcaggcgattggttatagtctgtat
atggaaatgctcgaaaaagcaaccaaagccattcaaaaaggcaaaacaccgaattttgat
gcgccgttgtcattaactgctgaaattaatttgcatatgcctgcgttgattccagatgac
tacttgggggatgtccatcagcgtttgttgttttataaacgtatcagtaataccgatagc
caagagaagctcgacaatatccgcatggaattgattgatcgttttggtattccgccacaa
cctgtgaagcaattgtttagtgtgcatcagctacgcctacgtgccgaacaattgggaatt
accaaaattgatatcaatagtaatgggggatatatcgagttttcaccggatacccctgta
caggcgatcagtatcattcaattgatgcagaaaaatccgacctattaccgaatggaaggt
gggcagcgcttgaaagttacagtgcaattggctgagtacgataagcggattcagttcatt
gtcgacttgctaaacaagctcttgagcgagttaaattga
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integrated database retrieval system
