Auxenochlorella protothecoides: F751_0348
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Entry
F751_0348 CDS
T04132
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 2
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
apro
Auxenochlorella protothecoides
Pathway
apro03013
Nucleocytoplasmic transport
apro03015
mRNA surveillance pathway
apro03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
apro00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
F751_0348
09122 Translation
03013 Nucleocytoplasmic transport
F751_0348
03015 mRNA surveillance pathway
F751_0348
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apro03019
]
F751_0348
03041 Spliceosome [BR:
apro03041
]
F751_0348
03009 Ribosome biogenesis [BR:
apro03009
]
F751_0348
03012 Translation factors [BR:
apro03012
]
F751_0348
Enzymes [BR:
apro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
F751_0348
Messenger RNA biogenesis [BR:
apro03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
F751_0348
mRNA cycle factors
Stress granule specific factors
F751_0348
Spliceosome [BR:
apro03041
]
Complex C
Other components
EJC/TREX
F751_0348
Ribosome biogenesis [BR:
apro03009
]
Eukaryotic type
90S particles
Helicases
F751_0348
Translation factors [BR:
apro03012
]
Eukaryotic type
Initiation factors
eIF-4
F751_0348
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_19
CbiA
AAA_30
Helicase_RecD
Motif
Other DBs
NCBI-GeneID:
23611739
NCBI-ProteinID:
XP_011395857
UniProt:
A0A087SB86
LinkDB
All DBs
Position
Unknown
AA seq
352 aa
AA seq
DB search
MEEEAGPRSGGGVIQGDASLEFETSKGVRVVSTFDAMNLKQDLLRGVYTYGFEKPSAIQQ
RAILPIISGRDVIAQAQSGTGKTSLIAITLCQMLDINTREVQALVVSPTRELATQTEKNI
LAIGDFMNVQAHACIGGKSVGEDIRRLEAGVHIVSGTPGRVYDMIKRRSLRTRAIRTLVL
DEADEMLSKGFKEQIYDVYRYLPPETQVVLVSATLPHEVLEMTHKFMTDPVDWLTDKMRQ
NNFTVSAMHGDMPQKERDAIMDEFRSGATRVLITTDVWARGLDVQQVSLVINYDLPNNRE
LYIHRIGRSGRFGRKGVAINFVKNDDIKILRDIEQYYATQVDEMPMNVADLI
NT seq
1059 nt
NT seq
+upstream
nt +downstream
nt
atggaagaggaagcgggtccccgctcgggcggcggcgtgatccagggcgatgccagcctg
gagttcgagacgagcaagggcgtgagggtggtgtccaccttcgacgccatgaacctgaag
caggacctcctgcgcggcgtctacacctacggctttgagaagccgtccgccatccagcag
cgtgccatcctgcccatcatctcgggccgggacgtgatcgcccaggcgcagtccggcacg
gggaagaccagcctgatcgccatcaccctctgtcagatgctggacatcaacacgcgagag
gtgcaggcgctggtggtgtcgccaacacgcgagctggccacacagacggagaagaacatc
ctggccatcggcgacttcatgaatgtgcaggcacacgcctgcatcgggggcaagtccgtg
ggcgaggacatccggcggctggaggcgggggtgcacatcgtgtctggcaccccgggccgc
gtgtacgacatgatcaagcgacgcagcctgcgcacgcgcgccatccgcacgctggtgctg
gacgaggcggacgagatgctgtccaaggggttcaaggagcagatctacgacgtgtaccgc
tacctcccccccgagacccaggtggtgctggtgtcggccacactgccgcacgaggtgctg
gagatgacgcacaagttcatgaccgacccggtggattggctgacggacaagatgcgacag
aacaacttcactgtttcggccatgcatggcgacatgccgcagaaggagcgcgacgccatc
atggacgagtttcgctccggcgccacgcgcgtgctcatcaccaccgacgtctgggcgcgg
ggtctggacgtgcagcaggtgtcgctggtgatcaactacgacctgcccaacaaccgcgag
ctctacatccaccgcatcgggcgcagcgggcggttcgggcgcaagggcgtggccatcaac
ttcgtgaagaatgatgacatcaagatcctgcgcgacatcgagcagtactacgccacgcag
gtggacgagatgcccatgaacgttgcagacctgatctga
DBGET
integrated database retrieval system
