Auxenochlorella protothecoides: F751_0688
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Entry
F751_0688 CDS
T04132
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
apro
Auxenochlorella protothecoides
Pathway
apro03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
apro00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
F751_0688
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
apro03041
]
F751_0688
03009 Ribosome biogenesis [BR:
apro03009
]
F751_0688
Enzymes [BR:
apro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
F751_0688
Spliceosome [BR:
apro03041
]
Complex A
U2 snRNP components
U2 related factors
F751_0688
Complex B
F751_0688
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
F751_0688
Ribosome biogenesis [BR:
apro03009
]
Eukaryotic type
90S particles
Helicases
F751_0688
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_N
Helicase_C
AAA_22
DEAD
HA2_C
AAA_19
ResIII
nSTAND3
SRP54
Flavi_DEAD
IstB_IS21
AAA_30
TsaE
NACHT
T2SSE
AAA_16
AAA_7
TrwB_AAD_bind
Motif
Other DBs
NCBI-GeneID:
23612079
NCBI-ProteinID:
XP_011401009
UniProt:
A0A087SQJ8
LinkDB
All DBs
Position
Unknown
AA seq
668 aa
AA seq
DB search
MAERKRKLELYDTPAAPNGTPAVQSGGVNPFTGRPYSQRYHEILAGRQGLPVWQARKDFV
DMLGSHQTIILVGETGSGKTTQIAQFIAEAGYCTAGLKVACTQPRRVAAMSVARRVADEM
DVTLGEEVGYSIRFEECTGPRTLVKFATDGMLLREAMTDPLLEKYSVIILDEAHERTLAT
DVLFGLIKEVLVKRTDLKLVVMSATLEAEKFQSYFLDAPLIKVPGRLHPVEIFYTQEPER
DYLEASIRTVVQIHQYEAPGDVLVFLTGEEEIEDACRKITSEIEQLGSKVGPIKVYPLYS
TLPPQQQQKIFDQAPGPLKPGGIPGRKIIVSTNIAETSLTIDGIVYVIDPGFAKQKVYNP
RIRVESLLVSPISRASAHQRAGRAGRTKPGKCFRLYTEASFGKDLQEQTYPEILRSNLGS
VVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLGALDDDGNLTPIGTIMAEFPLDP
QLSKMVVASPRFNCSNEILSIAATLSVPQHNGDADWCYQNFLNARALKSADNVRGQLLRI
CQRLGVNMVSTDFNSRDYYTNIRKAMLAGYFMQVAHVERTGHYLTVKDNQNVYLHPSTCL
QTKPEWVLYQEFVLTTKNYIRTVTEIKGEWLVDLAPHYYDLSNFPAGEARRALEKLFAKR
ERDRSGKF
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggcagaacgaaaacgcaagctcgagctgtatgacacacccgcggcgcccaacggcacg
cccgcggtgcagtccggtggtgtgaacccctttaccgggcgcccctactcccagcgatac
catgagatcctagccggccgtcagggcctgccggtgtggcaggcccggaaggactttgtg
gacatgctgggctcccaccagaccatcatcctcgtgggcgagaccgggtccggcaagacc
acccagatcgcgcagttcatcgcggaggcggggtactgcaccgctggcctcaaggtggcc
tgcacccagccgcggcgcgtggccgccatgtcggtcgcgcgccgcgtggcggacgagatg
gatgtgacgctgggggaggaggtgggctactccatccgctttgaggagtgcacgggccct
cgcactctggtcaagtttgccaccgacggcatgctactgcgcgaggccatgactgacccg
ctgctggagaagtactccgtcatcatcctggatgaggcgcatgagcgcaccctggccaca
gacgtcctctttggcctgataaaggaggtcctggtcaagcgcaccgacctgaagctggtg
gtcatgagcgccacgctggaggcggaaaagttccagtcctacttcctggatgcgccgctg
atcaaggtgcccgggcgcctgcacccggtggagatcttctacacccaggagccggagcgg
gactatttggaggcctccatccgtaccgtggtgcaaatacatcagtacgaggccccgggc
gacgtgcttgtcttcctgacgggagaggaggagatcgaggacgcctgccggaagatcacc
agcgagatcgagcagctgggctccaaggtggggcccatcaaggtgtaccccctgtactcc
accctcccgccgcagcagcagcaaaagatcttcgaccaggcgccgggcccgctgaagccg
ggcggcatccccgggcgcaagatcatcgtctccaccaacatcgccgagacgtcactgacc
atcgacggcatcgtgtacgtgattgacccgggcttcgccaagcaaaaggtgtacaacccg
cgcatccgtgtcgagtccctgctggtctcgcccatcagccgggcctcggcccaccagcgc
gccggccgtgcggggcggaccaagcccggcaagtgcttccggctgtacacggaggcgtcc
tttggcaaggacctgcaggagcagacctaccctgagatcctgcgcagcaatctggggtca
gtcgtgctgcagctcaagaagctgggcattgatgacctggtgcattttgacttcatggac
ccccccgcgccggagacgctcatgcgggccctggagctgctcaattacctgggcgcgctg
gacgacgacggcaacctcacccccatcggcaccatcatggccgagttccccctggacccc
cagctgtctaagatggtggtggcctctccccgcttcaactgctccaacgagatcctgagc
atcgccgccacgctgagcgtgccacagcacaacggcgacgccgactggtgctatcagaac
ttcctcaacgcgcgggccctcaagtctgcggacaatgtccgggggcagctgctccgcatc
tgccagaggctgggcgtaaacatggtgtctacagactttaattcgcgagattactacacc
aacatccggaaggctatgctggcagggtacttcatgcaggtagcccacgtggagcggaca
gggcactacctcacggtcaaggacaaccagaacgtgtacctgcacccctccacctgcctc
caaaccaaacccgaatgggtcctgtaccaagagtttgtgctcaccaccaagaactacatc
cggacagtcaccgagatcaagggcgagtggctagtggacttagcgccgcactactacgac
ctctccaactttccggccggggaggcacgcagggcgctggagaaactgtttgcaaagcgg
gagagggatcgcagcggaaagttctga
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integrated database retrieval system
