Auxenochlorella protothecoides: F751_2141
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Entry
F751_2141 CDS
T04132
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
apro
Auxenochlorella protothecoides
Pathway
apro03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
apro00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
F751_2141
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
apro03041
]
F751_2141
Enzymes [BR:
apro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
F751_2141
Spliceosome [BR:
apro03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
F751_2141
Complex B
F751_2141
Complex C
U2 SnRNP specific factors
F751_2141
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
23613532
NCBI-ProteinID:
XP_011399492
UniProt:
A0A087SLF0
LinkDB
All DBs
Position
Unknown
AA seq
539 aa
AA seq
DB search
MAPADEEEVDPLDAFMAEMKELEKASDAQAPSARAAGKSAAERFDELDPAADFLEAKKAG
ALPPSAVTAAAMQSGAAGADGSDEEVYAAAAAALESDADGVGGGKLENSSGFKQAVGSLA
PLDHPNLTYEDFDKDFYVEAPALTSMSQAEVSARRRSLGLTVSGFDAPRPIATFTQAGFD
APLLTAIVRAGYKEPTAIQAQALPAILSGRDVLGIAKTGSGKTAAFVLPAMVHIMDQQEL
EKGEGPIAIIVGPTHELAEQIHRETHRFAKGYKLRVCAAFGGLPKHQQFRELKAGAEIAV
CTPGRLIDLVRMKACNLQRVTYVVLDEADRMFDMGFEPQIRSILGQIRPDRQLLLFSATM
PMKVERLANDALSGPVRIRVGEAGMANEDISQRVEVVADEAAKRAWLRQHLPTLVDAGEV
LLFAGTKARVDELAAELAAQGVRAGAIHGDLDAGSRAAVLASFRAGTTHVLVATDVAARG
LDIKTLKTVVNYDAGRSIDSYIHRIGRTGRAGDKEGVAYTLLLPSEGQMADGRLRLGLW
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atggcacctgcagacgaagaggaggtggaccctctggatgccttcatggcagagatgaag
gagctggagaaggctagcgatgcccaggccccaagtgcacgagcagctggcaagtctgct
gcagaacgtttcgacgagctcgaccctgcagccgatttcctggaggcaaagaaggccggg
gcgctgcccccctcagccgtcacggcggcggccatgcagtctggtgcggcaggcgctgac
ggctcggacgaggaggtgtatgccgctgcagccgccgccctagagtcagacgccgacggc
gtgggtgggggcaagctggagaattcttcaggcttcaagcaggctgtgggctctctggcg
cccctggaccaccccaacctgacctacgaggattttgacaaggacttttatgtagaagct
cctgcgttgacatcgatgtcccaggcagaggtgagtgcgcggcggaggtccctgggcctc
accgtctcgggcttcgacgccccacggcccatcgccacattcacccaagctggctttgat
gcccccctcctgacggctatcgtgagggcggggtacaaggagcccaccgcgatccaggcc
caggcgctccctgccatcctgtctgggagggatgtcctcggcattgccaagaccggcagc
ggcaagacggcggcctttgtcctaccagccatggtccacatcatggatcagcaggagctg
gaaaagggggagggtcccatcgccattatcgtgggccccactcatgagctggccgagcag
atccaccgcgaaacccatcgctttgccaagggctataagctgcgggtgtgtgctgcgttt
ggtggcctccccaaacaccagcaattccgagagctgaaggcgggggcggagatagcggtg
tgcactcctggccgtctcatcgaccttgtcaggatgaaggcctgcaatctgcagcgagtg
acatatgtggtgctggacgaggcggatcgcatgtttgacatgggcttcgaaccccagatc
cggtccatcctgggtcaaatccgaccagacagacagctcctgctgttcagcgccacgatg
ccgatgaaggtggaaaggctggccaacgatgccttgtctggcccggttcgaatccgcgtg
ggcgaggcgggaatggccaacgaagacatcagccagcgcgtggaggtggtggccgacgag
gcggccaagcgcgcctggctgcgtcagcacctccccaccctggtggatgcaggggaggtc
ctcctcttcgccggcaccaaggccagggtggacgagctggcggctgagctcgccgcccag
ggcgtccgcgccggcgccatccacggcgacctggacgccggctcacgcgctgcggtgctg
gccagcttccgggcaggtaccacccacgtcctggtggccacagacgtcgcagcgcggggc
ctggacatcaagaccctgaagacggtggtgaactacgatgcagggaggagcattgactcc
tacatccaccggattgggcgcacaggcagggctggggacaaggagggtgtcgcatacacc
cttctcctacccagcgaggggcagatggcagacgggcggctccggcttgggctttggtga
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