Auxenochlorella protothecoides: F751_2212
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Entry
F751_2212 CDS
T04132
Name
(RefSeq) PAB-dependent poly(A)-specific ribonuclease subunit 3
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
apro
Auxenochlorella protothecoides
Pathway
apro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F751_2212
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apro03019
]
F751_2212
Messenger RNA biogenesis [BR:
apro03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
F751_2212
mRNA degradation factors
3'-5' decay
Pan complex
F751_2212
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pan3_PK
Motif
Other DBs
NCBI-GeneID:
23613603
NCBI-ProteinID:
XP_011399563
UniProt:
A0A087SLM1
LinkDB
All DBs
Position
Unknown
AA seq
520 aa
AA seq
DB search
MKASLQSTASEFVPGDQKPAGPVGGAKGSPSLTGTLSATPFVPSPKLLVGLEAPPFTPAF
AVLSAAGQGPFVPGGPGVAAGQRSPQAGRGRGRRPAAPYAATLGQPATVPASALSITEAL
RAELQADLTAQQAQPDPGLPDFVGSYHSLCALEDASPGAAHPAPALGVPSRVYRAASARD
GSCVALRRLDPQAVAPAPQLLAGFRAAQERWRAVEGQPFLAAWREALVSAELDGAPALWL
AHAFVPGAVTLEVAHLAPGARPPGVDRLWQYLVQLAAALHAVHGAGLVLWGAGLAPSKIL
VSSEAGGAPRLRIAAAGTLDALMQVPGAGEEDLRRLQRSDLAALGHTLLTLACAGLGASP
SLDLLPGSTPPDLVRVIAGLLASAQGGGFQDTSALAGALAMHTVGALSSTAARGDAMRAE
LAKECENGRLLRLLARLGTVAGRPSLGGDTEWAETGDRYMLKLFYSFLLHQVDEAGQPTL
DWGVLAESLNKLDAGVPESVGWAWTLGGWRYCGRHGDNDC
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atgaaggccagcctgcaaagcaccgcctcggagttcgtgcctggcgatcagaagccggcg
gggcccgtaggcggagcgaagggatccccatcgctcactggcaccctgtcggccacgccc
ttcgtgccctctcccaagctcttggtggggctcgaggcacctcccttcaccccagccttt
gcggtgctgagcgcggcggggcagggacccttcgtccccggcggcccgggagtggcggcg
ggccagcgctcgccgcaggcgggcaggggccgagggaggcgtcccgcggcgccgtacgct
gccacgctgggccagccggcgacggtgcccgcctctgcgctttccattaccgaggccctg
cgcgccgagctgcaggccgacctgacagcgcagcaggcccagcccgacccgggcctgccc
gacttcgtggggagctaccactcgctgtgcgcgctggaggacgcctcccccggcgcggcc
caccccgcgcccgccctgggcgtgccctcccgcgtctaccgcgccgcctcggcccgcgac
gggtcctgcgtggcgctgcggcgcctggacccgcaggccgtggcccccgcgccgcagctg
ctggccggcttccgcgccgcgcaggagcgctggcgcgctgtggaggggcagcctttcctg
gccgcctggcgcgaggcgctggtcagcgccgagctggacggtgcgcccgcgctctggctg
gcccacgcctttgtccctggcgcggtcacgctggaggttgcccacctggcgcctggcgcg
cggccgccgggcgtggaccgcctctggcagtacctcgtccagctggcggcggcgctgcac
gctgtgcatggagcggggctggtgctctggggcgcggggctggcgccctccaagatcctg
gtgtcgagcgaggcgggcggcgccccccgtctgcgcatcgcggccgccggcacgctggac
gcgctgatgcaggtccccggcgcgggcgaggaggacctgcgtcgcctgcagcgctccgac
ctggctgcgctgggccacacgctgctgaccctggcctgcgccgggctgggcgccagcccc
tccctggacctgctgccggggtcgaccccgcccgacctggtccgcgtcatcgcggggctg
ctcgcctcggcgcagggcggcggcttccaggacacgtccgccctggccggcgccctggcg
atgcacacggtgggcgcgctttcttcgaccgcagcacgcggcgacgcgatgcgcgccgag
ctggccaaggagtgcgagaacgggcgcctgctgcgcctgctggcgcggctgggcaccgtg
gccgggcggcccagcctgggcggcgacactgagtgggcggagacgggggacaggtatatg
ctgaagctcttctactccttcctactgcaccaagtggacgaggcgggtcagcccaccctg
gactggggggtgctggcggagtccctcaacaagctggacgctggggtgccggaatcggtg
ggatgggcgtggaccttgggagggtggcggtactgcggccggcatggtgacaacgattgc
tga
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