Auxenochlorella protothecoides: F751_2480 Help Entry F751_2480         CDS       T04132                                  Name (RefSeq) Helicase SKI2W   KO K12599   antiviral helicase SKI2 [EC:5.6.2.6] Organism apro  Auxenochlorella protothecoides Pathway apro03018   RNA degradation Brite KEGG Orthology (KO) [BR:apro00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     F751_2480  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:apro03019]     F751_2480 Enzymes [BR:apro01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.6  RNA 3'-5' helicase      F751_2480 Messenger RNA biogenesis [BR:apro03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     eIF4F and regulatory proteins      F751_2480   mRNA degradation factors    3'-5' decay     Ski complex      F751_2480 SSDB OrthologParalogGFIT Motif Pfam:  DSHCT DEAD ADH_N ADH_zinc_N MTR4_beta-barrel PHD ADH_zinc_N_2 MTR4-like_stalk DEXQc_Suv3 Helicase_C PHD_Pygo Zn_ribbon_3 PHD_NSD PHDvar_NSD Motif Other DBs NCBI-GeneID:  23613871 NCBI-ProteinID:  XP_011398534 UniProt:  A0A087SIT4 LinkDB All DBs Position Unknown AA seq 1497 aa AA seqDB search MATAVTCKSLVYEKPGDPVEVLSLKESPVPSPSSLKDGQILIKLIASPINPSDINTVEGK YPLQPELPGTPGNDGLGRVEAVGPKVSGLSPGDQVVPVAACPGTWRSHAVAAASNWLRVP PTLSPEAACALSINPPTALLMLRDYVDLAPGDVVIQNGGNSAVGRLVSQLAARRGLRAVS VVRGRGDAAADAELARELEGLGAALVTTPERLKADLAAAGLPPPRLGLDCVGGEVALALA KTLEKGGTLVTYGAMSKQPLAIPAPLLIFKDLRFRGFWASGGFSKDEEGLARKREVLKEV ADLFEEGALDAPKFKRVALEDWKEALESIKDGRLNSKLVFYQDNGIWLAEEEEGSEGSKQ SDGTQAAAAEGTQDEPASDVPATPSPLEDILGVQPGDLGWAPGPGSLAPLTNNAPVSKTH GAPLWVSSNPVPDLARRWAALAPGLARTWPFELDVFQKEAIVHMEAGRSVFVAAHTSAGK TVVAEYALALASRHATRAVYTSPIKTISNQKFRDFGAEFDVGLLTGDVQINPDASCLIMT TEILRSMLYKGADVVRDIEWVVFDEVHYVNDAERGVVWEEVIIMLPPHVKLVLLSATVPN VLEFADWVGRTKRQVIHVTGTTRRPTPLEHSLYHGGQLHTICRGEAQEQALVDAYAADGW RGGAREKGRPLQEIQRAKDQIRRCREIVRECVRTCEEAEGDTPIPASCFDEEGELDSDAI FCAKCGNREADDDNDIVLCDGPCNRAYHCKCIVPPLDVSTLTEDEGWLCPACDHKLLHTT PQTLDFTSSSEKSEIHLFCEKCFARLTGTDRQLPQVLRVTEMLKRGLGVHHAGLLPIVKE VVEMLFCRGIIKVLLATETFAMGVNAPARTVVFQSLRKHDGHSFRPLLSGEYTQMAGRAG RRGLDAVGTVIVAAWDELPQEGDIRRLLTGSATRLESQFRLTYSMILNLLRVEDLKVEDM LRRSFAEFHVQRRQPELTAVLEEGQEALRKLRARSWPRSPLGTTREAVEAYYDVCAEVAR LDSLVQGEVAQSRAAAAALAHGRLALVTHPGSGLVGLGVVVEGGAGGGRAAPGPRPAGGG AEAEGPARTMLMLYSPGPRDEYAGAGEVQRDTAEPAPAAQPAPPPGLKLMGKKKNDDDDL LLMGKGGKKGGKKKPVAALATPALVLPHRGSVAGAQYLIAEVPLRCITGICRQRLADVDG PGVLHGTPAALSTAVSALLRAQAEAGPSGEPETLDPATDLKLQSYEVVRAARERTVLAAQ RGLMAAHSDPLLPEMYAMIRSEKVLTQRLSVMVKRLSNDSLAQLPEFHQRVGVLQRLGYL DADRMVTLKGRVACELNSGDELAATELVYGGVLTDLEPEEAVALLSALEKTQAEVTLPPR LAEARDRAMDLAEAAGVLQAEAGLQLEPVEWAASVLRFGLAEVVYEWARGTPFHSICELT DVMEGTIVRAIVRLDETCREFRDAARIMGNVDLFKQMEAASECIKRDVIFAASLYVT NT seq 4494 nt NT seq  +upstreamnt  +downstreamnt atggccaccgcagtcacatgcaagtcgcttgtctacgagaagccgggggaccccgtagag gtcctgtcgctgaaggagagtccagttccctccccatcctcgcttaaggatgggcagatc ctgatcaagctcattgcgtcgcccatcaatccgtcagacatcaacacggtggagggcaag tacccgctgcagcccgagctgcctgggacccctggcaacgacggtctgggcagggtggag gcagtgggccccaaggtgtcaggcctgagccccggcgaccaagtggtcccggtggcggcc tgcccaggcacgtggcgctcccacgccgtggcggctgcgagcaactggctgcgcgtaccc cccacgctctcccccgaggcggcctgcgcgctgtccatcaacccccccaccgccctcctc atgctccgcgactacgtggatctggcgcccggggacgtggtgatccagaacggcggcaac agcgccgtggggcggctggtgagccagctggccgcccgtcgcggcctgcgcgccgtcagc gtcgtgcgtggccgtggcgacgcggccgccgacgccgagctggcgcgggagctggagggc ctgggcgccgcgctggtgaccaccccggagcgactgaaggccgacctggcggccgccggg ctgcccccgccccgcctggggctggactgcgttgggggggaggtggccctggccctggcc aagaccctggagaaggggggcaccttggtgacctatggcgcgatgagcaagcagcccctg gccatccccgcacccctcctcatcttcaaggatctgcggttcaggggcttctgggcctcg ggaggcttctcaaaggatgaggagggtctggcgaggaagagggaggtcctgaaggaagtc gcagacctcttcgaggagggtgccctggacgctcccaaattcaagagggtggcgctggag gactggaaggaggcgctggagtccatcaaggacgggaggctcaactccaagctcgtcttc taccaggacaacggcatctggctggccgaggaggaggaggggtcagagggtagcaaacaa agcgacggcacccaagcggctgcagcagagggcacgcaggatgagcccgcctcggatgtg ccagcgacgccatcgccactggaagacatcttgggggttcagcccggggaccttggctgg gccccgggcccggggtcgctggcgcccctgaccaacaacgcccccgtttccaagacgcat ggcgccccgctctgggtctcgagcaaccctgtccccgatctggcccggcgctgggcggcg ctggcccccggcctcgcccgcacctggcccttcgagctggatgtcttccagaaggaggcc attgtgcacatggaggcggggcgcagcgtgtttgtggctgcccacacctccgcgggcaag acggtggtggccgagtacgcgctggcgctggccagccgccacgccacacgcgcggtgtac acaagccccatcaagaccatcagcaaccaaaagttccgtgactttggcgcggagtttgac gtgggcctgctgaccggggacgtccagatcaaccccgacgcctcctgcctcatcatgacc accgagatcctgcgcagcatgctctacaagggcgccgatgtcgttcgcgacattgagtgg gtggtcttcgacgaggtccattatgtcaatgacgcggagcgtggggtggtgtgggaggag gtgatcatcatgctcccgccccacgtcaagctggtcctcctctccgccacggtgcccaat gtgctggagtttgccgactgggtgggccggaccaagcgccaggtcatccacgtgacggga accacgaggcgacccaccccgctggagcacagcctgtaccacggcggccagctgcacacc atctgccggggcgaggcgcaggagcaggcgctggttgatgcctatgcggcggacggctgg cgggggggggcacgcgagaaggggagacccctgcaggagatccagcgcgccaaggaccag atccggaggtgccgcgagatcgtgcgggagtgtgtcaggacctgcgaggaggcagaggga gacaccccaatcccagccagctgctttgatgaggagggggagctcgactcggacgccatc ttctgcgctaagtgcggaaatcgggaagctgacgacgacaacgacatcgttctgtgcgac ggtccttgcaaccgagcctaccactgcaagtgcatcgtgccgcccctggacgtcagcacc ctgacagaggatgagggctggctgtgccctgcctgcgaccacaagctgctgcacaccacc cctcagacgctggactttacctcctccagcgagaagagcgagatccacctcttctgcgaa aagtgctttgccaggctgacggggacggatcggcagttgccccaggtcttacgggtcacg gagatgctgaagagggggctgggggtgcaccatgcgggcctgctgcccatcgtgaaggag gtagtggagatgctgttctgccgcggcatcatcaaggttctgcttgccacagagacgttt gccatgggggtgaacgcccccgccaggacggtcgtcttccagtcgcttcgtaagcacgat ggtcacagcttccggccactgctctccggtgagtacacccagatggcgggcagggccggc cggcgggggctggatgcggtgggcaccgtcatcgtggccgcctgggacgagctgccgcag gagggcgacatccgccgcctgctgacgggctcagccacgcgactggagagccagttccgc ctgacctactccatgattttgaacctcctgcgcgtggaggacctcaaggtggaggacatg ctgcggcgctcctttgccgagttccatgtccagaggcggcagcccgagctgacggcggtg ctggaggaggggcaggaggccctgaggaagctgcgcgcccgctcctggccacgctccccg ctgggcacgacgcgcgaggcggtggaggcatactacgacgtgtgcgccgaggtggcgcga ctggactccctggtgcagggggaggtggcgcagagccgcgccgccgcggcagcgctggcc cacggccgcctggcgctggtcacccaccccggctcgggcctggtcggcctgggggtggtg gtcgagggcggggcgggcggcggccgcgcggcgccggggccgcgcccggccggcggtggt gcggaggcggagggtcccgcccgcaccatgctcatgctctactcccctggaccccgagac gagtacgccggggcgggggaggtgcaacgagacactgccgaacctgcaccggctgcgcag ccggcgccccctcccggcctgaagctgatgggcaagaaaaagaacgacgacgacgacctg ctgctcatgggcaagggtgggaagaaaggagggaagaagaagccggtggcagccctcgct accccggccctcgtgctgccccaccgcggcagcgtcgctggcgcgcagtacctcatcgcg gaggtaccgctgcgctgcatcaccggcatctgccgccagcggctggcggacgtggacggc ccgggggtgttgcacggcacgcccgccgcgctctccacggccgtctcggcgctgctccgt gcccaggccgaggccgggccgtccggcgagcctgagacgctggacccggccacagacttg aagctccagagctacgaggtcgtgagggccgccagggagcgaactgtgctggccgctcag cgtggcctgatggcagcccactccgatcccctgctgccagagatgtatgccatgatccgc agcgagaaggtgctgacccagcgcctatctgtcatggtcaagcggctgagcaacgacagc ctggcccagctgcccgagttccaccagcgcgtgggggtactgcagcgcctggggtacctg gacgcggatcgcatggtgaccctgaaggggcgggtggcctgcgagctgaattccggggac gaactggccgccaccgagctggtgtacggcggcgtgctgacggacctggagcccgaggag gccgtggccctgctctcggccctggagaagacgcaggcggaggtgaccctgccgccacgc ttggcagaggctagggaccgggcgatggacctggcagaggcggccggcgtcctgcaggcg gaagccggcctgcagctggaacccgtggagtgggcggcctcggtgctccgcttcgggctc gcagaggtggtgtacgagtgggcacgggggaccccctttcactccatctgcgagctgaca gacgtcatggaggggaccattgtccgggccatcgtccgcctggatgagacgtgcagggag ttccgggatgcagccaggatcatggggaatgtggaccttttcaagcagatggaggccgcg tcggagtgcatcaagcgcgacgtcatctttgctgcatccctgtacgtcacctga

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