Auxenochlorella protothecoides: F751_3323
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Entry
F751_3323 CDS
T04132
Name
(RefSeq) Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
apro
Auxenochlorella protothecoides
Pathway
apro03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
apro00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
F751_3323
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
apro03041
]
F751_3323
Enzymes [BR:
apro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
F751_3323
Spliceosome [BR:
apro03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
F751_3323
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
WHD_HA2
HA2_C
AAA_22
DEAD
nSTAND3
AAA_19
Cas3-like_C_2
T2SSE
ATPase
ABC_tran
PhoH
Motif
Other DBs
NCBI-GeneID:
23614714
NCBI-ProteinID:
XP_011396002
UniProt:
A0A087SBM8
LinkDB
All DBs
Position
Unknown
AA seq
1029 aa
AA seq
DB search
MPCVCLIVVIAGFAERALVDYVVSIARRAKHPDALCTTLEAQGLPASQATRSFAIDLLSR
CSGAGTSGASAAVSAQRQAHAEAVAAARRNQAYSLIVADDDAPGEQPRTAPSPGGPLEGR
DGGSDRGSKSSKRRSTRKSRPGDDDDGGAEGALVARPARKRAWEEDPAGQDPEAAAAAAE
LEAREAAREADKAAKEDFEARLREKDEARTRKLAEKKIPREELEDLQRRRAAEAAEDRSA
VTGMLRDMSRQEYLKKREEAKLQELKDALEDEKFLFQGKKMTEKERRDLAYKEEVYRLAV
ERKKQLDELEHDDAYHLPGSYDAPGTAPDKRYEVLTQRYREPEEDEVPDAPWAQQEAFEA
EQIRKAVKTSAKAAQAPAYDYVFEDQVEFIVDQMLGGEGELLWPPGCREDLLKAIAEHQV
LIIVGETGSGKTTQIPQYLYEAGYGKAGKIGCTQPRRVAAMSVAARVAVEVGVKLGAEVG
YSIRFEDCTSDKTVLKYMTDGMLLREFLSEPDLAGYSCMMVDEAHERTLHTDVLFGLVKD
IARFRPELKLLISSATLDAEKFSEYFDNAPIFRIPGRRYPVDILYTKAPEADYLHAAAVT
TLQIHVTQPPGDVLIFLTGQEEIEACEELLRQRTRGMGSKIGELIIAPIYANLPSDMQAK
IFETTPPGARKVVIATNIAETSLTIDGIKYVIDPGFCKQNSYNPRTGMESLQVTPISKAS
ALQRAGRAGRTAPGKCFRLYTAWAYQHELEDSTVPEIQRTNLGNVVLMLKSLGINDLINF
DFMDPPPTETMLRALEQLYALGALNDKGELTTMGRKMAEFPVDPMLAKMIINSEKHGVSE
EVATIAAMVSIGGSVFYRPKDKQVHADNAHKAFYRGNVGDHIALLNVYNSWAETNFATQW
DIRDQILGLMERCEVELVSNVGDLEGMRKAITAGFFYHTASLQRNGSYRTVKNPQTVAIH
PSSGLAEALPRWLVYHELVLTTKEYMRVVSEIKPEWLVEIAPHYYSRKEIMDQAAKKLPK
QLGKAAEPT
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atgccatgtgtgtgcctcatcgttgtgattgcaggcttcgctgagcgggcgttggtggac
tacgtggtgtccatcgctcgccgtgccaagcaccccgacgctctctgcacgacccttgag
gctcaggggctgccggcttcccaggccacccgcagctttgcaatcgacctgctgtcgaga
tgcagcggcgcaggtaccagcggcgcatctgctgcggtctcggcgcagaggcaggcccac
gcagaggccgtggcagccgcgcggcggaaccaggcctacagcctgatagtcgccgacgac
gacgcgcccggggagcagccccgcaccgccccctcccctggtggccccctggagggcagg
gatgggggttcagatcgcgggagcaagagctccaagcggcgcagcacccgcaagtcacgg
ccgggcgacgatgatgacggcggcgcagagggagccctggtcgccaggccggcgaggaag
cgcgcgtgggaggaggatccggccgggcaggaccccgaagcggcggccgcggcggccgag
ttggaggcacgcgaggcggcgcgcgaggccgacaaggcagcgaaggaggactttgaggcg
cgactgcgggaaaaggacgaggcgcggacgcgcaagctcgccgagaagaagatcccgcgg
gaggagctggaggacctgcagaggcggcgcgccgccgaggccgccgaggaccgctcggcc
gtcaccgggatgctcagggacatgtcgaggcaggagtacctgaagaagcgggaggaggcc
aagctccaggagctgaaggacgcgctggaggacgagaagttcctcttccagggcaagaag
atgacagagaaggagcggcgggacctggcatacaaggaggaggtgtatcggctggccgtg
gagaggaagaagcagctggacgagctggagcacgacgatgcctatcacctgcccggcagc
tacgacgcgcccggcaccgcgccagacaagcgttacgaggtgctgacgcagcggtaccgc
gagccggaggaggacgaggtgccggacgcgccctgggcgcagcaggaggcattcgaggca
gagcagatccggaaggcggtgaagaccagcgccaaggcggcgcaggcaccagcctatgac
tatgtgtttgaggaccaggtggagttcatcgtcgaccagatgctgggaggggagggcgaa
ctcctgtggccgcctgggtgcagggaggatctgctgaaggccattgcggagcaccaggtg
ctcatcatcgtcggcgagacggggtcggggaagaccacgcagatcccgcagtacctatac
gaggcagggtatggcaaggccggcaagatcggctgtacacaaccaaggcgtgtggctgcc
atgtcggtggcggcccgtgtggctgtggaagtcggcgtgaagctgggggccgaggtgggc
tactccatccgcttcgaggactgcacgagcgacaagaccgtgctcaagtacatgacagac
ggcatgctgctgcgggagttcctctcagaaccggatctggccgggtacagctgcatgatg
gtggatgaggcgcatgagcgcaccctccacaccgacgtcctctttgggctggtgaaggac
attgcacgcttccggccggagctgaagctgctcatctcctctgccacgctcgacgccgag
aaattctccgagtactttgacaatgcccccatctttcgaatcccgggccggcggtaccca
gtggacatcctgtacactaaggcccccgaggcagactacctgcacgcggcggcggtgacc
acgctgcagatccacgtcacacagccgccgggggacgtcctcatcttcctgacggggcag
gaggagattgaggcctgcgaggagctccttcgccagcgcacccgcggcatgggcagcaag
atcggggagctcatcatcgcccccatctatgccaacctgccctcggacatgcaggccaag
atcttcgagactaccccccccggtgcacgcaaggtggtcattgccaccaacattgccgag
acgtcgctcaccatcgatggcatcaagtacgtgatagatcctggcttctgcaagcagaac
tcgtacaacccacgtacagggatggagtcgctgcaggtcacccccatctccaaggcgtcg
gcgctgcaacgtgcagggcgcgcggggcgcaccgcgccgggcaagtgcttccggctgtac
acggcctgggcgtatcagcatgaactggaggactccacggtgccggagatccagaggact
aatctggggaatgtggtactcatgctcaagtcgctgggcatcaacgacctcatcaacttt
gacttcatggacccgccgcccaccgagacgatgctgagggcgctggagcagctgtatgcg
cttggcgcgctgaatgacaagggcgagctcaccaccatgggccgcaagatggccgagttc
ccggtggaccccatgctggccaagatgatcatcaacagcgagaagcatggcgtgtcggag
gaggtggccaccatagctgccatggtgtccatcggcggctcggtcttttaccgccccaag
gacaagcaggtgcacgcggacaacgcgcacaaggccttctacagaggcaacgtcggggac
cacattgccctgctgaatgtctacaactcttgggccgagaccaattttgctacgcagtgg
gacatccgggatcaaatcctgggcctcatggagcgctgcgaggtggagctggtgagcaac
gtgggggacctggagggcatgcgcaaggccatcaccgccggcttcttctaccacaccgcc
tccctgcagcgcaacggcagctaccgcaccgtcaagaaccctcagaccgtggccatccac
ccctccagcggcctggcggaggccctgccgcgctggctggtctaccacgagctcgtgctg
acgaccaaggagtacatgcgcgttgtgtcggagatcaagcccgaatggctggtggagatc
gcgccgcactactacagccgcaaggagatcatggaccaggccgcgaagaagctgcccaag
cagctgggcaaggcggccgagcccacatga
DBGET
integrated database retrieval system
