Auxenochlorella protothecoides: F751_3524
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Entry
F751_3524 CDS
T04132
Name
(RefSeq) Superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
apro
Auxenochlorella protothecoides
Pathway
apro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F751_3524
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apro03019
]
F751_3524
03041 Spliceosome [BR:
apro03041
]
F751_3524
03009 Ribosome biogenesis [BR:
apro03009
]
F751_3524
03016 Transfer RNA biogenesis [BR:
apro03016
]
F751_3524
Enzymes [BR:
apro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
F751_3524
Messenger RNA biogenesis [BR:
apro03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
F751_3524
Spliceosome [BR:
apro03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
F751_3524
Complex C
U4/U6.U5 tri-SnRNP related factors
F751_3524
Ribosome biogenesis [BR:
apro03009
]
Eukaryotic type
Pre-60S particles
Helicases
F751_3524
Transfer RNA biogenesis [BR:
apro03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
F751_3524
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
MTR4-like_stalk
MTR4_beta-barrel
Helicase_C
DEXQc_Suv3
nSTAND3
DUF4736
Motif
Other DBs
NCBI-GeneID:
23614915
NCBI-ProteinID:
XP_011401739
UniProt:
A0A087SSJ0
LinkDB
All DBs
Position
Unknown
AA seq
597 aa
AA seq
DB search
MARQYPFTLDPFQQTAINCLEAGHSVLVAAHTSAGKTVIAEYAFAMALRDKQRVIYTSPL
KALSNQKYRELQQEFGDVGLMTGDVTINPNASCLVVREVQLLVYDEIHYLRDKERGVVWE
ESIILAPRCARFAFLSATIPNAREFAEWIAKIHESPCHVVYTEYRPTPLEHYVFPAGGDG
LYMVVDSRGNFREDNFGKAVAVVNDVTGDSVSASKRQKKGAGGGDPTLVIGDGKEKSDVA
KLVKMVMEKNFDPIIIFSFSKKECESLAMQMVAMDLNTAEEKQMIEAVFTSAIDVLSIED
QKLPQIRNLLPMLQRGFGVHHSGLLPILKEMVEILFQEGLIKALFATETFSTGLNMPAKT
VCFTHVRKFDGGSFRWVSSGEYIQMSGRAGRRGLDDKGLVVMMLDARMEPSVAKQMLKGA
ADTLYSEFHLEYNMLLNLMRVEGVEPEELMHRSYRQFQTERLLPALQQKLRRLEGEHESF
KIPDEHSIEEYLMLTDQLVAFQQQMRSLLYQPKYALPFLQPGRLVQISLAAEATDETDGS
AEGPTHAPVWGAIINFQKALSKSKRGKDDEKPRSKDKEFLIDILVNIRKVSAQQSHR
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atggctcggcagtaccccttcaccctggatcccttccagcaaacggcaatcaactgcctg
gaagcaggacactctgtccttgtggctgctcatacctcagcagggaagaccgttatcgca
gagtatgcctttgcaatggcactcagagacaagcagcgtgtcatctacacctctccgctg
aaagccttgagcaaccaaaagtaccgggagctgcagcaagagtttggagatgttggactg
atgactggagatgtcaccatcaacccaaatgccagctgcctcgtggtgagggaggtccag
ctcttggtgtacgatgagatccactacctgagagacaaggagcgaggagttgtttgggaa
gaaagcatcatcctggccccaagatgtgctcgatttgccttcctgtcggctaccattccc
aatgcgagggagtttgccgagtggattgccaagatacacgagtcgccttgccacgtcgtg
tacaccgagtacaggcccacacccctggagcactacgtctttccggcggggggcgatggc
ctgtacatggtggtcgactcaaggggtaacttcagggaggataactttggcaaagctgtt
gcagtcgtcaatgacgtcacgggcgactctgtttcggcctccaagaggcagaagaagggt
gcaggcggaggcgatcccaccctcgtgataggagatggaaaggaaaagtctgacgtggcc
aagcttgtcaagatggtgatggagaaaaacttcgatccgataatcattttcagcttcagc
aagaaggaatgtgaaagcctggccatgcaaatggttgcgatggacctgaacacggctgag
gagaagcagatgatcgaagctgtcttcacgagtgccattgacgtcctatcaatagaggac
cagaaactgccacaaatacgtaacctactccccatgctccaaagaggctttggcgtccac
cattcagggctgctcccaattctaaaggagatggtcgagattctgttccaggaaggcctg
atcaaggccctctttgcaaccgagacgttttccaccgggctgaacatgcctgccaagacg
gtttgcttcactcacgtccgaaagttcgacggtggcagcttccgctgggtatctagtgga
gagtacatccagatgagcggcagagctgggcggcgcggattagatgacaagggtttggtg
gtgatgatgctggacgcaaggatggagcctagcgttgccaagcagatgctgaagggtgct
gctgacacgttatattcagagtttcacctcgagtataatatgctgctgaacctgatgagg
gtggaaggtgtggagcctgaggagcttatgcaccgcagttaccggcaattccagacggag
aggctgctgcctgccttgcagcagaagctcaggcgactagagggggaacacgaaagcttc
aagatcccggacgagcatagcatcgaagagtatctcatgctcactgatcaattggtagct
tttcagcaacagatgcgaagcttgctgtaccagccgaaatacgccctaccattcttgcaa
cccggcagacttgtgcagatatctttggctgcggaagcgaccgacgagaccgatggctca
gctgaaggtcccacacatgcacctgtttggggcgccatcattaacttccagaaggcgctg
agcaagagcaagcggggcaaggacgacgagaagcccagatcaaaggacaaggagttcctt
atagacattctggtcaacatcaggaaagtcagcgcccagcaatctcatcggtaa
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