KEGG   Auxenochlorella protothecoides: F751_3598
Entry
F751_3598         CDS       T04132                                 
Name
(RefSeq) Exosome complex component CSL4
  KO
K07573  exosome complex component CSL4
Organism
apro  Auxenochlorella protothecoides
Pathway
apro03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:apro00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    F751_3598
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:apro03019]
    F751_3598
Messenger RNA biogenesis [BR:apro03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     F751_3598
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     F751_3598
SSDB
Motif
Pfam: EXOSC1 ECR1_N RRP4_S1 TRAM
Other DBs
NCBI-GeneID: 23614989
NCBI-ProteinID: XP_011398856
UniProt: A0A087SJQ6
LinkDB
Position
Unknown
AA seq 189 aa
MTETCTPGQRLGLVTEFEPGAGTYVAGSFVCASLVGIQRTVPVEETADKRLPRLEVSRST
RPDPVPSPGDVVTARITRLTPRLALADILCVGEHPCAQRYSGVVRIQDVRATEIDSVRLP
AAFRPGDLIRAEVLSLGDARSYFLTTAKNELGVVYAKSIAAGVPMVPLSWQEMQCPTTQS
VESRKVARV
NT seq 570 nt   +upstreamnt  +downstreamnt
atgacggaaacttgcaccccaggacagcgcctgggtcttgtgaccgagttcgagccaggc
gcgggaacctacgtcgcaggaagctttgtgtgcgcgtccctggtcggcatccagcgcacc
gtgcccgtcgaggagacagctgacaagcgcctgccccgcctcgaggtctcccgctccacc
cgccccgaccccgtgccatcccccggggacgtggtgaccgcccgcatcacgcgcctgacg
ccccgcctcgccctcgccgacatcctgtgcgtgggtgaacacccctgcgcccagcgctac
agcggcgtggtccgcatccaggacgtgcgcgccaccgagatcgactccgtgcgcctgccc
gccgccttccgcccaggggacctgatccgggccgaggtattgtccctgggcgacgcccgc
tcctacttcctcaccactgccaagaacgagctgggcgtggtctacgccaagagcatcgca
gccggagtgcccatggtcccgctgagctggcaggagatgcagtgccccaccacccaatcc
gtcgagtcccgcaaggtcgcccgcgtctag

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