Auxenochlorella protothecoides: F751_4378
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Entry
F751_4378 CDS
T04132
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
apro
Auxenochlorella protothecoides
Pathway
apro03020
RNA polymerase
apro03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
apro00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
F751_4378
09124 Replication and repair
03420 Nucleotide excision repair
F751_4378
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
apro03021
]
F751_4378
03400 DNA repair and recombination proteins [BR:
apro03400
]
F751_4378
Enzymes [BR:
apro01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
F751_4378
Transcription machinery [BR:
apro03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
F751_4378
DNA repair and recombination proteins [BR:
apro03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
F751_4378
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Ubiquitin_TPR1
Motif
Other DBs
NCBI-GeneID:
23615769
NCBI-ProteinID:
XP_011396369
UniProt:
A0A087SCP2
LinkDB
All DBs
Position
Unknown
AA seq
1137 aa
AA seq
DB search
MFGDDEDLAVAEDQEIEENDAWAVISAYFEEKGLVRQQLDSFNGFINSSLQEIVDENSLI
TVTPNNQHNPGQSLEEEAESTTYEIKFGQIYLSKPTFVEADGETVAIFPKEARLRNLTYA
APLYVDLEKRVITRRPGPDGEGEESEEHVTPYDKVFLGDVPIMLRSDYCNLHGRSERDLS
DLGECPYDQGGYFIINGSEKVLIAQERMANNHVYVFRKSQPSKYAFQAECRSVCEGSVRA
SSSMSVRMLSRAGAKKGAGQCIRATLPYIRSDIPLLVVFRALGFTADRDILEHIVYDFGD
DAMLEALRPSIEEAFPIGDQEVALDYIGKRGTTVGATRERRVAYARDLLEKEFLPHISME
PACETRKAYFLGYVVHRLLLVALGRRDEDDRDHYGNKRLDLGGPLLANLFRALFRKLGKD
TRAHVQRCVDRGREINLTAAVNKDTISRGLKYSLATGNWGVLGGPGELRPGVTQVLNRLT
YASTLSHLRRINSPIGREGKLAKPRQLHNTQWGMICPAETPEGQACGLVKNLALMTYVSV
GCAAGPLLEFLEECATEALEDIAPGVVARATKILVNGVWVGVHRDPGDLVARLRAMRRHV
DIETEVGVVHDIPLRELRLTTDAGRCCRPLFIVQDRRLRVRKRDVVALQARDETGFSWDS
LIEAGAIEYVDVEEEETTMMAMSIHDLKAAREDPLHAYSDTYTHCEIHPAMILGVCASIV
PFPDHNQSPRNTYQSAMGKQAMGINTIVAIACYSGYNQEDSTMMNQSSIDRGIFRSIFFR
SYKTEERKQGSIVQEFIERPSREITAGMRHGTYDKLDDDGIAAPGTRVSGDDVVIGKTSP
IPDDGSGMPQRFTKRDCSSSLRHSESGMVDAVLLTTGADGQRFVKMRVRSIRIPQVGDKF
ASRHGQKGTIGITYTQEDMPFTAEGIVPDLIINPHAIPSRMTIGHLVEALMSKVAACLGK
EGDATPFTAVTVEDISTLLHGCGYQQRGWETMYNGHTGRALAAPIFLNPTYYQRLKHMVD
DKIHARGRGPVQILTRQPVEGRARDGGLRFGEMERDCIISHGASAFLKERLFDQSDAYRV
HVCERCGLIAVANLKKNQYYCTACKNTTGIVAVHLPYACKLLFQELMAMCIAPRMQF
NT seq
3414 nt
NT seq
+upstream
nt +downstream
nt
atgttcggcgacgatgaggacctggcggtggccgaggaccaggagattgaggaaaacgat
gcgtgggcggtgatcagcgcctacttcgaggagaagggcctggtgcggcagcagctggac
tctttcaacggcttcatcaacagcagcctgcaggagatagtggacgagaacagcctcatc
acggtcacgcccaacaaccagcacaacccggggcagtcgctggaggaggaggcggagagc
accacatacgagatcaagtttggccagatctacctgtccaagcccacttttgtggaggcg
gacggcgagacggtggccatcttccccaaggaagcccgcctgcgcaacctgacctacgcc
gcgccgctgtacgtggacctggagaagcgggtgatcacgcgccgcccgggcccggacggt
gagggggaggagagcgaggagcacgtgacgccttacgacaaggtgttcctgggggacgtc
cccatcatgctccgctccgactactgcaacctgcacggccgctctgagcgcgacctgagc
gacctgggcgagtgcccctacgaccagggcggctacttcatcatcaacggctcggagaag
gtgctcattgcccaagagcgcatggccaacaaccacgtgtacgtgttcaggaagagccag
ccgtccaagtacgccttccaggccgagtgccggtcggtttgcgagggcagcgtgcgcgcg
agcagctccatgtcggtgcgcatgctgtcgcgggcgggggccaagaagggcgcggggcag
tgcatccgcgccacgctgccctacatccgctccgacatcccgctgctcgtggtcttccgc
gcgctgggcttcaccgcggaccgcgacatcctggagcacatagtgtacgactttggcgac
gacgcgatgctggaggcgctgcgccccagcatcgaggaggccttccccatcggcgaccag
gaggtggcgctggactacatcggcaagcgcggcaccaccgtgggcgccacgcgcgagcgc
cgcgtggcctacgcccgcgacctgctggagaaggagttcctgccccacatctccatggag
ccggcctgtgagacgcgcaaggcctacttcctgggctacgtggtccaccgcctgctcctg
gtggccctgggtcgtcgcgacgaggacgaccgcgaccactacggcaacaagcgcctggac
ctggggggcccgctgctggccaacctcttccgcgcgctgttcaggaagctgggcaaggac
acgcgcgcgcacgtgcagcgctgcgtggaccgcgggcgcgagatcaacctgaccgccgcg
gtgaacaaggacaccatcagccgcgggctgaagtacagcctggccacggggaactggggc
gtgctgggggggcccggagagctgcgccccggcgtgacccaggtgctgaaccgcctgacc
tacgccagcacgctatcgcacctgcgccgcatcaactcgcccatcgggcgcgagggcaag
ctggccaagccgcgccagctgcataacacgcagtggggcatgatctgccccgccgagacg
cccgagggccaggcctgcgggctggtcaagaacctggcgctcatgacctacgtgtcggtc
ggctgcgcggcgggcccgctgctggagttcctggaggagtgcgccaccgaggcgctggag
gacatcgcgcccggggtggtggctcgcgccaccaagatcctggtcaacggcgtgtgggtt
ggcgtgcaccgtgaccccggggacctggtggcgcgcctgcgcgccatgcgccgccacgtg
gacattgagaccgaggtgggcgtggtgcacgacatccccctgcgcgagctgcgcctgacc
accgacgcggggcgctgctgccgcccgctcttcatcgtccaggatcggcgcctgcgcgtg
cgcaagcgcgacgtggtggccctccaggcgcgcgacgagacgggcttctcctgggacagc
ctcattgaggcgggggccatcgagtacgtggacgtggaggaggaggagaccaccatgatg
gccatgagcatccatgacctgaaggccgcgcgagaggatccgctgcacgcgtattcagac
acctacacgcactgcgagatccaccccgccatgatcctgggggtgtgcgcctccatcgtg
cccttcccggaccacaatcagtcgccgcgcaacacctaccagtcggccatgggcaagcag
gccatgggcatcaacaccatcgtggccatcgcctgctattccggctacaaccaggaagat
tctaccatgatgaaccagtccagcatcgaccgcggcatcttccggtccatcttcttccga
tcctacaagacagaggagcggaagcagggttccatcgtgcaggagttcatcgagcggccc
agccgggagatcactgccggcatgcggcacggcacgtacgacaagttagacgacgatggc
atcgcagctcctggcacccgtgtctcgggcgacgatgtggtgattggcaagacctcaccc
atccccgacgacggctcgggcatgccccagcgcttcaccaagcgcgactgcagcagcagc
ctgcgccacagcgagagcggcatggtggatgcggtgctactcaccaccggcgcagatggc
cagcgctttgtcaagatgagggtgcgatcgatccgtatcccccaggtaggcgacaaattt
gcttcgcggcacgggcagaagggcaccatcggcatcacctacacccaggaggacatgccc
ttcaccgcggagggcatcgtgcccgacctgatcatcaacccgcacgccatcccgtcgcgc
atgaccatcggtcacttggtggaggcgctgatgagcaaggtggcggcgtgcctgggcaag
gagggcgacgccacacccttcaccgccgtgaccgtggaggacatctccaccctactccac
ggctgcggctaccagcagcgcggctgggagaccatgtacaacgggcacacggggcgcgcg
ctggcggcgcccatcttcctcaaccccacctactaccagcgcctgaagcacatggtggac
gacaagatccacgcgcgcggtcgggggccggtccagatcctgacgcgccagcccgtggag
ggccgcgcgcgcgacggcggcctgcgcttcggcgagatggagcgcgactgcatcatcagc
cacggcgcctctgccttcctcaaggagcgcctgttcgaccagagcgacgcctaccgggtg
catgtctgcgagcgctgcggcctgatcgcggtggccaacctgaagaagaaccagtactac
tgcaccgcctgcaagaacaccaccggcatcgtggccgtgcacttgccctacgcctgcaag
ctcctgttccaggagctgatggccatgtgcatcgcgccgcgcatgcagttctaa
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