Auxenochlorella protothecoides: F751_4582
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Entry
F751_4582 CDS
T04132
Name
(RefSeq) Superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
apro
Auxenochlorella protothecoides
Pathway
apro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F751_4582
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apro03019
]
F751_4582
03041 Spliceosome [BR:
apro03041
]
F751_4582
03009 Ribosome biogenesis [BR:
apro03009
]
F751_4582
03016 Transfer RNA biogenesis [BR:
apro03016
]
F751_4582
Enzymes [BR:
apro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
F751_4582
Messenger RNA biogenesis [BR:
apro03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
F751_4582
Spliceosome [BR:
apro03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
F751_4582
Complex C
U4/U6.U5 tri-SnRNP related factors
F751_4582
Ribosome biogenesis [BR:
apro03009
]
Eukaryotic type
Pre-60S particles
Helicases
F751_4582
Transfer RNA biogenesis [BR:
apro03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
F751_4582
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
IstB_IS21
Motif
Other DBs
NCBI-GeneID:
23615973
NCBI-ProteinID:
XP_011400279
UniProt:
A0A087SNK8
LinkDB
All DBs
Position
Unknown
AA seq
1005 aa
AA seq
DB search
MEATAEGLAKAAATREALKKKKRELELIEDGPPSKKPTGAAPSAVCTHEVACPKGFDPSS
ITLDPELYGTLEDPQWKGKPAKEYPFVLDSFQAKAVACVERKENVLVAAHTSAGKTAIAE
YAIAKAFAMGQRVFYTSPIKALSNQKFRELSEEFGDVGLMTGDVSINPNAACIVMTTEIL
RSMIYRGSELLRETAWIVFDEVHYMQDRERGVIWEETIIFAPKDARMVFLSATLSNATEF
ADWVASVHQSPCHVVYTEFRPTPLRHFAFPSGGDGLYLVMNEFGEFRDDNFQKLQKVLGK
GGDGGQEGKGKRGGGGGGGKPTGASAAQDLRKIVMLIKERKLDPVIVFSFSRRECESNAM
LMAKADLGALDFNTQEEKETVDAVFQSALQCLSEKDRDLRAVAHIYPLLRCGIGIHHSGL
LPIIKEVVEILFQEQLIKCLFATETFAMGLNMPARTVVFTAMRKWDGQEERWMGSGEYIQ
MSGRAGRRGKDDRGMTIMMMNNSMDEATCKAIIKGKANPLLSSFRLSYYTLLNLMRRVEG
SGASMEYVIQHSFSQFQHEKELPALEARLEEVQAAVAAIGDAGEETAAEYTRLKTRLAEL
ESTLAAEVRKPERCLHYLRPGRLVRVVQEGVDWGWGVVVSAMREERGNAPPAAAPAYHMD
TLLCCAGVVGGEPTPALLDDERGSMEVIPVPLGLLHALSTLRISIPQDLRPPEARRAVLQ
TLKALRGRYPGGALPLLHPVDDMGIEDTGVAAAAAEREEVAAALTANPISKAERGEGEAS
LMAPLREKARLMAEAESLAARMRASQLTSFRDEARHRGAVLRKLGYVDGEGVVTLKGRVA
CEINTADELLATELMLNGTFNALDRHQLVAMVSCLVQVEKSNEQIRLKESLARPLQALQD
AARRIAEVSVECRLEVKVDEYVESFWPFLMDVIYAWSKGASFAEICEMTDLFEGSIVRAT
RRLDELMSELERAALAVGDAGLAAKIAESRDTIRRDIMFAASLYI
NT seq
3018 nt
NT seq
+upstream
nt +downstream
nt
atggaggccacagcggaggggctcgccaaagccgctgcgactcgggaagctctgaagaag
aaaaagagggagttggaactgatcgaagatgggcccccatccaagaagccaacgggtgca
gcaccatctgccgtgtgcacgcatgaggtagcttgcccaaagggctttgaccccagcagc
atcaccctcgaccctgagctctatggaacattggaggacccgcagtggaaggggaagccc
gccaaggagtacccctttgtcctggactctttccaagccaaggcggtggcctgcgtggag
cgcaaggagaatgtgctggtggccgcccacacctctgccgggaagacggcgatcgcagag
tacgccatcgccaaggccttcgccatgggccagcgcgttttctacacctcccccatcaag
gcactgagcaaccagaagttccgcgagctgtcggaggagtttggcgacgtgggcctgatg
acaggggacgtttccatcaatcccaacgccgcctgcattgtcatgaccacggagatcctg
cgctccatgatctacaggggctccgagctgctgcgcgagacggcgtggatcgtgtttgat
gaggttcactacatgcaggaccgggagcgcggcgtgatctgggaggagacgatcatcttt
gcgcccaaggatgcgcgcatggtcttcctctccgccacgctttccaacgccactgagttt
gccgactgggtggcctcggtgcaccagtccccctgccacgtggtgtacaccgagttccga
cccacccccctgcgccactttgcatttccctcgggcggggacgggctgtatctggtgatg
aacgaatttggcgagttccgagacgacaacttccagaagcttcaaaaggtgctgggcaag
ggcggcgacggcgggcaggagggcaagggcaagaggggcggcggcggcggcggcgggaag
cccaccggcgcctcggcggcacaagacctccgcaagattgtgatgctgatcaaggagcga
aagctggaccccgtcatcgtcttcagcttcagccgcagggagtgcgaatccaatgccatg
ctgatggccaaggccgacctgggagccctggacttcaatacccaggaagaaaaggagacg
gtggatgcggtgttccaatccgccctccagtgcctgtccgagaaggaccgggacctgagg
gcggtggcgcacatctaccccctgctgcgctgcggcatcggcatccaccactccggcctg
ctgcccatcatcaaggaggtggtggagatcctgttccaggagcagctgatcaagtgcctg
tttgccaccgagacctttgccatgggcctcaacatgcctgcccgcacggtggtcttcacg
gcgatgcgaaagtgggacgggcaggaggagcggtggatggggagcggggagtacattcag
atgagcggccgcgcggggcggcgaggaaaggacgaccgcgggatgaccatcatgatgatg
aacaacagcatggacgaggccacgtgcaaggccatcatcaagggcaaggccaacccgctg
ctctcctccttccgcctgtcctattacaccctgctcaacctgatgcggcgggtggagggc
agcggggccagcatggagtatgtcatccagcactccttctcccagtttcagcacgagaag
gagctgccagcgctggaggcccggctggaggaggttcaggcggcagtggcggccatcggg
gacgcgggggaggagacggcggcggagtacaccaggctcaagacgcggctggcggagctg
gaaagcacgctcgctgcggaggtcaggaagccggagcggtgcctgcactacctgaggccg
ggccgcctcgtccgcgtggtccaggagggtgtggactggggctggggcgtggtggtcagc
gcgatgcgggaggagcgtggcaacgccccgcccgccgccgcgcctgcctaccacatggac
acgctgctgtgctgcgccggggtcgtgggcggcgagcccaccccggccctgctcgacgac
gagcggggcagcatggaggtgatcccggtgcccctaggcctgctgcacgcgctgagcacg
ctgcgcatcagcatcccgcaggacctgcgcccgccggaggcgcgccgcgccgtgctgcag
acgctgaaggcgctgcgcggaaggtaccccggcggcgccctgcctctccttcaccccgtc
gacgacatgggcatcgaggacactggcgtggcggccgctgccgccgagcgcgaggaggtt
gccgccgcgttgacggccaaccccatctctaaggcggagcgcggggagggcgaggcctcg
ctgatggctcccctgcgcgagaaggcgcggctgatggctgaggccgagtcgctggcggca
cgcatgcgagcctcacagctgaccagcttccgggacgaagcgcgtcaccgcggcgcggtc
ctgcgcaagctgggctatgtggacggggagggagtggtgacgctcaaggggcgcgtggcc
tgtgagatcaacaccgccgatgagctgctggcaacggaactgatgctgaacggcaccttc
aatgccctggatcggcaccagctggtggccatggtgtcctgcctggtgcaggtggagaag
agcaacgagcagatccggctgaaggagagcctggcgcggccgctgcaggcgctgcaagac
gccgcgcggcgcattgccgaggtgtcggtggagtgcaggctggaggtgaaggtggacgag
tacgtggagtcattttggcccttcctcatggacgttatctacgcctggtccaagggcgca
tcctttgctgagatctgcgagatgacagacctgtttgagggcagcatcgtcagggcaacg
aggcggctggatgagctgatgagcgagctggagcgggccgcgctggcggtgggcgacgca
ggactggccgccaagatcgccgagtcgcgggacaccatccgacgagacatcatgtttgct
gcctccctgtatatttga
DBGET
integrated database retrieval system
