KEGG   Auxenochlorella protothecoides: F751_4693
Entry
F751_4693         CDS       T04132                                 
Name
(RefSeq) 5'-3' exoribonuclease 1
  KO
K12618  5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
apro  Auxenochlorella protothecoides
Pathway
apro03008  Ribosome biogenesis in eukaryotes
apro03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:apro00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    F751_4693
  09123 Folding, sorting and degradation
   03018 RNA degradation
    F751_4693
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:apro03019]
    F751_4693
   03009 Ribosome biogenesis [BR:apro03009]
    F751_4693
   03016 Transfer RNA biogenesis [BR:apro03016]
    F751_4693
   03036 Chromosome and associated proteins [BR:apro03036]
    F751_4693
Messenger RNA biogenesis [BR:apro03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     F751_4693
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     F751_4693
Ribosome biogenesis [BR:apro03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    F751_4693
Transfer RNA biogenesis [BR:apro03016]
 Eukaryotic type
  tRNA degradation factors
   Rapid tRNA decay (RTD) pathway factors
    F751_4693
Chromosome and associated proteins [BR:apro03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    F751_4693
SSDB
Motif
Pfam: XRN_N XRN_M XRN1_D1 XRN1_D2_D3 SH3_12
Other DBs
NCBI-GeneID: 23616084
NCBI-ProteinID: XP_011399096
UniProt: A0A087SKE6
LinkDB
Position
Unknown
AA seq 1216 aa
MGIPKFYRWLSERYPLINQPGGATVVPIIDNLYLDMNGIIHNCTHGNNPDVRLTEDEMIL
RIFTYLDKIFHIVKPQKLLFMAIDGVAPRAKMNQQRSRRFKAAKEAAAAAEKAEKAAAKT
SDVAEDSKPPVFDSNCITPGTPFMVRLGAHFRFFVRKKIAEDVAWRRPTIIFSGHDVPGE
GEHKIMEHIRWAKQAPGYPPNTRHCLYGLDADLIMLSLVTHEPHFCLLREVVSYTGGGKG
QPAREALENPGESTFVLLQIGLLREYFELEFKPAQKMPFPFSVERVVDDFVLFCMLIGND
FLPPLPTVDIAEGSLETMFDLYKELLPELGGYLTHAGKLHRGRLEVFLHKLANLEAKVLQ
ERALEAQSLDDKKRKKGPGETPAWASERVEGRRREERAAGPNAPPAGDEVPELGLGHGGR
FAALASGRGLELLAAEARDLFLKSASAEEAALAWKERLYVTKLGVGTDPAARRAVVDAYM
HGLHWVLEYYYRGVASWNWYYPYHYAPMASDLVDLEQVRISFTHGEPFLPYEQLLAVQPA
ASCQLLPGPYQRFMLDPDSPINFFYPKDFVVDLEGKKAEWEGVVLIPFIDEQKLLAVSRS
IPPSALTPMEQTCNQHGSMVIFKHAGELTGETSDCSSTLPESFSNVTLCNSTVTRQPPLP
PFPHGQPGFIPKIVPGTKMGKHAPSGFPTLGTLSVAGKIENAKCSVFGMHSKRPSLILAI
KAPAVDVTPTAETLAPHVIGSRVWIRWPYLTEGLISCIGDETGRVPAAGAPVIVDPAWKE
NVEAQRIEFLEKRGVDIGPSPLWVEVRPLEVLVRHADGSFAKSFAEKGEMVPLQLALRSN
PSPDPRFDPDALQAGAALFEPGSRAVVGKGPYYGCLARVLGPGAGGEVGPGPRRAMSVSV
EPPPPTAASAAKTALALLGGGAPRYCPAHQAAKQVGISPSALGRIAGSLYLVIGESRRDR
LDVGLCVRNAKLGLCVPDAVRFVPPKQPPPRPQAVGEGPPAPVPKGSWEYSEALIKLLKS
YKVKAPWLWAAVEQDAKAFELDASRVCPGETPEERLAAAEGLHAWLKRQPMARRPLVSQD
AAVAPEAALGHRVVALGGTGVPPFGARGSVTALLPTAVEVVFDGPFAGGSDLGGRTPRAG
NLQQLFAGLAVAAAGPCAPTAGDAGTSDVIAGQSVTTPAAGSLWLEVIEVCLSSVLQENR
GMELNVKRAGVDVNCL
NT seq 3651 nt   +upstreamnt  +downstreamnt
atgggcatccccaagttctaccgctggctcagcgagcggtaccccttgataaaccagcca
gggggtgccacggtggtccccatcatcgacaacctttaccttgacatgaacggcatcatt
cacaactgcacgcacgggaacaacccggacgtcagactgacagaggacgaaatgatcctg
cgcatcttcacgtaccttgacaagattttccacatcgtcaaaccccagaagctgctgttc
atggctatcgatggcgtggcgccccgtgccaagatgaaccagcagcgatcgcggcgattc
aaggctgccaaggaagccgccgccgctgccgagaaggccgagaaggccgccgcaaagacc
tctgacgtcgcagaggacagcaagccgcccgtttttgactccaactgcatcacgcccggc
acacccttcatggtgcggctgggcgcccacttccgcttctttgtccgcaagaagatcgcc
gaggacgtggcatggcggcgacccaccatcatcttctcagggcacgacgtcccgggagag
ggagagcacaagatcatggagcacatccgctgggcgaaacaggcgcccggctacccgccc
aacacccggcactgcctctacgggctggacgccgacctcatcatgctctccctggtcacc
cacgagccccacttctgcctcctgcgggaggtggtgagctacacgggcggcggcaagggc
cagcccgccagggaagccctggagaacccgggagaaagcacgtttgtcctgctgcagatc
gggctccttcgcgaatactttgagctggagtttaagcctgcgcagaagatgcccttccca
ttcagcgtcgagcgggtcgtggacgactttgtgctcttctgcatgctgatcgggaacgat
ttcctgccccccctgcccaccgtcgacatagcagaaggctcccttgaaaccatgtttgac
ctgtataaggagctcctgcctgagctgggtgggtacctgacccatgccgggaagctgcac
aggggcaggctggaggtgttcctgcacaagctcgccaacctggaggccaaggtcctgcag
gagcgcgcacttgaagcacagagcctcgacgacaagaagcggaagaaggggcccggcgag
actcccgcctgggcctcggagcgtgtggagggccggcggcgggaggagcgcgccgccggt
cccaatgcccccccggccggggacgaagtgcccgagctcggcctgggccacggcggccgt
ttcgcggcgctggcctctgggcgtggcctggagctgctggctgcggaagcgcgggacctg
ttcctgaagagcgccagcgcggaggaggccgcgctggcgtggaaggagcggctctatgtc
accaagctgggcgtgggcacggaccccgcggcgcggcgggcggtggtggatgcttacatg
cacggcctgcactgggtgctggagtactactaccgcggcgtggcctcctggaattggtac
tacccttaccactacgcacccatggcctccgatctggtggatctggagcaggtgcgcatc
agcttcacccatggcgagccgttcctaccctacgaacagctgctggcggtgcagccggca
gcttcctgccagctgctccccggcccctaccagagattcatgctggacccagactcgccc
atcaacttcttctaccccaaagattttgtggtggacctagagggcaagaaggcggagtgg
gagggcgtcgtcctcatccccttcatcgacgagcagaagctgctggcggtttctcgcagc
atcccgccctcggcgctcacccctatggagcagacctgcaaccagcacgggtccatggtc
atcttcaagcatgcgggagagctgaccggcgagacctccgactgcagcagcaccctcccc
gaatccttttccaacgtgacgctgtgcaattccacggtcactcgccagcccccactgccc
cccttcccgcacggacaacccggcttcattcccaagatcgtgccggggacgaagatgggc
aagcacgcgccgagcggctttccaaccctcggcacgctctccgtggccggcaagattgag
aatgcaaagtgctcggtctttgggatgcactccaagcggccctccctcatcctggcaatc
aaggcccccgccgttgacgtgacgcccacagccgagaccctggcccctcacgtcattgga
agccgggtctggatccgctggccatatttgacagaggggctcatctcatgcatcggggac
gagaccggcagggtgcccgctgcgggggccccggtgatcgtggacccagcgtggaaggag
aatgtggaggcccagaggatcgagttcctggagaaaaggggcgtggacatcgggcccagc
cccctgtgggtggaagtgcgtccgctggaggtgctggtgcgccacgccgacggcagcttc
gccaagagcttcgcggagaagggggaaatggtgccgctgcagctggcactgcggagcaac
ccctcccccgacccccgcttcgacccggacgcgctgcaggcgggcgcggcgctgttcgag
cccggcagccgtgcggtggtcggcaaggggccctactacggctgcctggcgcgggtgctg
ggcccgggcgccggaggggaggtcgggccgggaccgcggcgcgcgatgagcgtcagcgtc
gagccgccgccccccaccgccgccagcgcggccaagaccgcgctggcgctgctgggaggg
ggggcgccgcgttactgccccgcccaccaggcggccaagcaggtcggcatcagcccgagc
gccctgggccggatcgcaggctcgctgtaccttgtgattggggagagcaggagggaccgg
ctggacgtcggcctctgcgtgcggaatgccaagctgggcctgtgcgtcccggatgcggtg
aggtttgtgccgcccaagcagccgccgccgcggccgcaggctgtgggggaagggcccccg
gcgcccgtgcccaaaggatcttgggagtactccgaggcgctgatcaagctgctgaagtcg
tacaaggtcaaggccccctggctgtgggccgccgtggagcaggatgccaaggcctttgag
ctggacgcctccagggtctgccccggcgagacgcccgaggagcgcctggccgccgcggag
ggcctgcacgcctggctcaagcgccagcccatggcccggcggcccctggtgtcgcaggac
gcggccgtcgcgccggaggcggcgctgggccaccgcgtggtcgcgctggggggcacgggc
gtgccgccctttggcgcgcgcggcagcgtcaccgccctcctccccaccgcggtggaggtg
gtgttcgacgggcccttcgccggcggctcggacctgggcgggcgcacgccgcgtgccggc
aacctgcagcagctgtttgccgggctggccgtcgccgcggccgggccgtgcgccccgact
gcaggcgacgcaggcaccagcgacgtgattgccggtcagagtgtcacgactccggcggcc
gggtccctgtggctcgaggtcatcgaagtgtgcctgtccagcgtgttacaggaaaaccgg
ggcatggagctgaatgtaaaaagggcaggcgtggacgtgaattgcttgtaa

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