Auxenochlorella protothecoides: F751_4937
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Entry
F751_4937 CDS
T04132
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
apro
Auxenochlorella protothecoides
Pathway
apro03013
Nucleocytoplasmic transport
apro03015
mRNA surveillance pathway
apro03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
apro00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
F751_4937
09122 Translation
03013 Nucleocytoplasmic transport
F751_4937
03015 mRNA surveillance pathway
F751_4937
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apro03019
]
F751_4937
03041 Spliceosome [BR:
apro03041
]
F751_4937
Enzymes [BR:
apro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
F751_4937
Messenger RNA biogenesis [BR:
apro03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
F751_4937
Spliceosome [BR:
apro03041
]
Complex C
Other components
EJC/TREX
F751_4937
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
F751_4937
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
23616328
NCBI-ProteinID:
XP_011399824
UniProt:
A0A087SMC2
LinkDB
All DBs
Position
Unknown
AA seq
419 aa
AA seq
DB search
MADTEELVDYEEEEVLEPETAKGETVKKGYVGIHSSGFKDFLLKPELLRAIQDCGFEHPS
EVQHECIPQAILGMDVICQAKSGMGKTAVFVISTLQQLEPVDGQVSVLVLCHTRELAFQI
THEFERFTTYLKSVRLANFFGGLPIKAHRDLLKDGEKAPHILIGTPGRIKALADEGSLDL
SRVRHFVVDECDKCLESVDMRADVQAIFKRTPHDKQVMMFSATLSAEVRPVCKRFMRDPM
EIYVDDEAKLTLHGLVQHYVMLNEDAKNRKLNDLLDALDFNQVVIFVKSVARARELNKLL
CQCNFPSTTIHAGMDQAARLAVYKEFKEGAKRILVATDLRVNIVINYDMPETDDKHGNGA
DTYLHRVGRAGRFGTKGLAVTFVASPADSEVLNQVQERFDVDIKPLPDSVDASTYMNTA
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atggctgacaccgaggagctcgtcgactacgaggaggaggaggtcctggagccggagacg
gccaagggcgagacggtgaagaaggggtatgtcggcatccactcctcgggcttcaaggat
ttcctcctgaagcccgagctcctgcgcgccatccaggactgcggtttcgagcacccctcc
gaggtccagcacgagtgcatcccccaggccatcctgggcatggacgtcatctgccaggcc
aagtccggcatgggcaagaccgcggtgtttgtcatctccacgctgcagcagctggagccc
gtggacgggcaggtgtcggtgctggtgctgtgccacacgcgcgagctggccttccagatc
acgcacgagtttgagcgcttcaccacctacctcaagtcggtgcggctggccaacttcttc
gggggcctgcccatcaaggcccaccgcgacctgctcaaggacggcgagaaggcgccgcac
atcctcatcggcacccctggccgcatcaaggccctggccgacgagggcagcctggacctg
tcccgcgtgcgccactttgtggtggacgagtgcgacaagtgcctggagtcggtggacatg
cgggcagacgtgcaggccatcttcaagcgcacgccccacgacaagcaggtcatgatgttc
agcgccacgctgtcggccgaggtgcggcccgtgtgcaagcgcttcatgcgcgaccccatg
gagatctacgtggacgacgaggccaagctgaccctgcatggcctggtgcagcactacgtc
atgctgaacgaggacgccaagaaccggaagctgaatgacctgctggacgcgctggacttc
aaccaggtggtcatcttcgtcaagtccgtcgcgcgcgcgcgcgagctgaacaagctcctc
tgccagtgcaacttcccctccaccaccatccacgcgggtatggaccaggccgcgcgcctg
gccgtgtacaaggagttcaaggagggtgccaagcgcatcctggtcgccaccgatctgcgt
gtgaacatcgtgatcaactacgacatgccggagacagacgacaagcacggcaacggcgcc
gacacctacctccaccgcgtggggcgggcggggcgcttcggcaccaagggcctggcggta
acctttgtggccagccccgccgacagtgaggtgctgaaccaggtgcaggagcggtttgac
gtcgacatcaagcccctgccggactcggtggacgccagcacgtacatgaacacggcgtga
DBGET
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