Auxenochlorella protothecoides: F751_5277
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Entry
F751_5277 CDS
T04132
Name
(RefSeq) Poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
apro
Auxenochlorella protothecoides
Pathway
apro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F751_5277
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apro03019
]
F751_5277
Enzymes [BR:
apro01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
F751_5277
Messenger RNA biogenesis [BR:
apro03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
F751_5277
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
23616668
NCBI-ProteinID:
XP_011400948
UniProt:
A0A087SQD7
LinkDB
All DBs
Position
Unknown
AA seq
454 aa
AA seq
DB search
MPTIRDAIDHASFVAVDCEMTGLFDYEPKPWYLDDMQTRYEDVCGVAANAQKFGLIQIGL
AAFAPSLTGLGWASSLEFLSGCGFDFNKCIRHGVPYMTAVARDARLARVAREASAKERAS
QQPLIQLTAQRDIDFKEDFLARVRDWLASDTEEALLLPSSNSFQRAVQHQELRRPQFGAP
DPPGFHVEVVKGPSGYNQLRLVKADPEVAAAARAAATSKAQADIHAAAGFTAVLEMLRGA
GKPVVGHNAFFDLAFILSSFATQLPPSLRAFKELVRAWFPAGFWDTKHLACQLQAAQPAA
APEDTSLGALYADLEARAAGGVASDPGEGGLIQTAPLPTVGHSVTFDRYDFAGASMLAHE
AGYDAFMTGAVFARLAVLLGGAETVQAALPALAALRGRLNVTRSDYAYINLEGPDPEPRR
PKVLWVSGFEAGSLTGGSLARCGDWRLGFAGCGE
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgcccaccatccgtgatgccatcgaccatgcctcctttgttgctgtggactgcgagatg
actggcctgtttgactacgaacccaagccatggtacctggacgacatgcagacccgctat
gaggatgtatgtggggtcgctgccaatgcacagaagtttgggctcatccagatcggcctg
gcggcctttgccccgagcctcacgggcctgggttgggcctcctccctggaattcctgtct
ggctgtggctttgacttcaataaatgcattcgccacggcgtgccatacatgacagctgtg
gccagagacgcgaggcttgcacgtgtggctcgagaggccagcgccaaggaacgtgcctcc
cagcagcccctgatccagctgacggcccagcgagacatcgacttcaaggaagacttcctc
gcccgcgtcagggactggctggcgtccgacacggaggaggcgctgctgctgcccagcagc
aactctttccagcgagcggtgcaacaccaggagctgcggcggccccagtttggggcgccc
gacccgcccggcttccatgtggaggtggtcaaggggcctagcggctacaaccagctgcgg
ctggtcaaggcagacccggaggtagcggcggcggccagggctgccgcgacgtccaaggcg
caggctgacatccatgccgcggcaggcttcacggcggtgctggagatgctgaggggcgct
ggaaagcctgtggttggccacaacgccttcttcgacctggccttcatcctttcctccttc
gccacccagctgccccccagcctccgggccttcaaggagctggtgcgcgcctggttcccc
gccggcttctgggacaccaagcacctcgcctgccagctccaggccgcgcagccagcggca
gcgccggaggacacgagcctgggggcgctctatgccgatctggaggccagggccgcgggc
ggcgtggcaagtgatcccggtgaagggggcctcatccagaccgcgccgctgcccaccgtg
ggccacagcgtcacgtttgatcgctacgactttgcgggtgcctcgatgctggctcatgag
gccggctacgacgccttcatgacgggcgcggtctttgcccgcctggccgtgctgctgggc
ggcgcagagacggtgcaggcggccctccccgccctggccgccttgagggggcgcctcaat
gtcaccaggtctgactacgcctacatcaatctggagggtcccgaccccgagcctaggcgg
cccaaagtgctgtgggtgtctggattcgaggccggcagtctcaccggaggaagcctggca
cggtgtggtgactggcgactgggtttcgctggttgtggcgagtga
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