KEGG   Auxenochlorella protothecoides: F751_5335
Entry
F751_5335         CDS       T04132                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
apro  Auxenochlorella protothecoides
Pathway
apro03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:apro00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    F751_5335
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:apro03041]
    F751_5335
Spliceosome [BR:apro03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    F751_5335
 Complex C
   U5 SnRNP specific factors
    F751_5335
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz WDR55 Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd EIF3I Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st ANAPC4_WD40 Beta-prop_TEP1_C NBCH_WD40 Beta-prop_SCAP Beta-prop_IFT122_1st Beta-prop_EML WD40_MABP1-WDR62_1st WDR90_beta-prop_4th Beta-prop_SPT8 Beta-prop_RIG_2nd WD40_RFWD3 Beta-prop_EIPR1 Beta-prop_IFT140_1st Beta-prop_WDR19_1st Beta-prop_DCAF4 Beta-prop_DCAF12 Beta-prop_Nup120_160 Beta-prop_WDR75_2nd RMC1_N
Other DBs
NCBI-GeneID: 23616726
NCBI-ProteinID: XP_011401437
UniProt: A0A087SRR8
LinkDB
Position
Unknown
AA seq 359 aa
MADASKRPLSDGEEAGPSGALVEIKRQRLDEGAVVPAGPASSLATKPQGPSRTSALLAPT
MLLTGHADQVFTLKFNPDGDVLATGSYDKTILLYRTYGECENFLQIKGHKNGILELHWTP
DGLNLVSCSPDRTVRAWDASTGQQVKKMSEHGDIVNSCCPLKRGSPLLVSGSDDGTAKVW
DLRSKRSVATFTEKYQVLAVAWSEAGDAVYTGGIENVVRAWDLRRGAPSLTLAGHADTVT
GLAPSPDGAHLLSNSMDGTLRVWDVRPYAAQDRCQRVLTGHVHNFERNLLRCAWSPDGER
VTAGSADRMVYVWRSADGAVQYALPGHGGSVNEVVFHPTEPIVASASSDKTVYMGELAA
NT seq 1080 nt   +upstreamnt  +downstreamnt
atggcggacgcctccaaacgcccgctttcagacggggaggaggccggacccagtggtgcg
ctggtggagatcaagaggcaacgattggacgagggcgccgtcgttcccgctggacccgcc
tcatccctggccaccaagccgcagggtccatcccgcacgtctgcgcttctggcgcccacc
atgctgctcacaggccacgcggatcaggtgttcaccctgaagttcaacccggacggtgat
gtcctggccactgggagctacgacaagaccatcctcctgtaccgcacctacggggagtgc
gagaacttcctgcaaataaaagggcacaagaacgggatcctggagctgcactggacgcca
gacggcctgaacctggtctcctgctctccagaccgcactgtgcgggcctgggacgccagc
accgggcagcaggtgaagaagatgagcgagcacggcgacatcgtcaactcctgctgcccc
ctgaagcgcggcagcccgctgcttgtgtcgggctccgacgacggcaccgccaaggtctgg
gacctgcgcagcaaacggtcggtggccaccttcacggaaaagtaccaggtcctggcagtg
gcctggtcggaggccggggacgcggtgtacacgggcggcatcgagaacgtggtgcgcgcg
tgggatctgcgccggggcgccccctccctgaccctggcggggcacgccgacacggtcacg
ggcctggcgccgtcgccggacggcgcgcacctgctcagtaactccatggacggcacgctg
cgggtgtgggatgtgcggccctacgcggcgcaggaccgctgccaacgggtgctgactggg
catgtgcacaacttcgagcgcaacctgctgcgctgcgcctggagccccgatggggagcgc
gtgaccgccgggtcggcggaccgcatggtctacgtctggcggtctgccgacggcgcggtc
cagtacgcgctgccggggcacggcggcagcgtgaacgaggtggtgttccaccccaccgag
cccatcgtcgccagcgccagcagcgacaagaccgtgtacatgggggagctggcagcgtga

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