KEGG   Auxenochlorella protothecoides: F751_6500
Entry
F751_6500         CDS       T04132                                 
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
apro  Auxenochlorella protothecoides
Pathway
apro03013  Nucleocytoplasmic transport
apro03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:apro00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    F751_6500
  09122 Translation
   03013 Nucleocytoplasmic transport
    F751_6500
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:apro03019]
    F751_6500
   03041 Spliceosome [BR:apro03041]
    F751_6500
Messenger RNA biogenesis [BR:apro03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     F751_6500
Spliceosome [BR:apro03041]
 Complex C
  Other components
   EJC/TREX
    F751_6500
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    F751_6500
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 Beta-prop_IFT122_1st WD40_CDC20-Fz Beta-prop_WDR3_1st WD40_Prp19 WD40 Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd EIF3I WD40_Gbeta Beta-prop_WDR36-Utp21_2nd ANAPC4_WD40 CFAP251_N WDR55 Beta-prop_RIG_2nd Beta-prop_WDR3_2nd Beta-prop_WDR35_TULP_N Beta-prop_WDR19_1st Beta-prop_EML Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_EIPR1 Beta-prop_IFT140_1st WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st Beta-prop_WDR36-Utp21_1st DSE1_N Beta-prop_Vps41 Beta-prop_Aladin Beta-prop_VPS8 NBCH_WD40 WDR90_beta-prop_4th Beta-prop_NOL10_N Beta-prop_SCAP eIF2A Tricorn_2nd Beta-prop_HPS5 PAC11 Beta-prop_DCAF12 Beta-prop_IFT122_2nd
Other DBs
NCBI-GeneID: 23617891
NCBI-ProteinID: XP_011402030
UniProt: A0A087STC7
LinkDB
Position
Unknown
AA seq 331 aa
MTVAYADTPIAEWKRKELRAHRRKVFCVGWNEDGRRLATGSHDETMRVWSCDEAGIFKQE
MEMRGHQDAVSRLAWHPTHPDKLASLGQLTEQSVRFWDTRSGKNTATLPTPGINLSLVWS
PDAQYMAVNNLDDVVSILDVRRMKVVSKHNFKQQASMKSLGIECIFEIAFSKDSKHFYLA
TDAGEVEVLSFPDFKPERTMKGHVSRVSCMGFDPGHTRMASGGMDTVTSLWDLEEGICTQ
TFYDLDQAIRGVGFSHDGQYLAIVSEEPALEVVNLRTGANLGKQVLRTCPVDVAWNPRRH
ILAFPGASERDGSGAEHGLVELRYLPEQGQS
NT seq 996 nt   +upstreamnt  +downstreamnt
atgacggtggcttatgccgatacccccattgcggaatggaaacgcaaggagctgcgagca
cacaggcggaaggtcttctgcgttggatggaatgaggacggcaggaggctggccacgggc
tcccatgacgagaccatgcgcgtgtggagctgcgacgaggctggcatcttcaagcaggag
atggagatgagggggcaccaggacgccgtctcccgcctggcctggcaccccacacaccca
gacaagctcgcgtccctgggccagctcactgagcagtcggtcaggttttgggacacgagg
agcggcaagaacacggccaccctgcccacgcccgggatcaacctgtccctcgtctggtcg
ccggatgcccagtacatggctgtgaacaatctagacgatgtggtcagcatcctggatgtc
agacggatgaaggtggtcagcaagcacaacttcaagcagcaggcaagcatgaagtcgttg
ggcatagaatgtatattcgagattgccttcagcaaggactccaagcacttttacctcgcg
accgacgctggggaggtcgaggtgctgagcttcccagacttcaagccggagaggactatg
aagggccacgtctcccgggtctcctgcatgggctttgaccctgggcacacgcgcatggcc
agcgggggaatggacacggtcaccagcctctgggatctggaggagggcatctgcacacag
acgttctacgacttggaccaagccatacgtggcgttgggttcagtcacgatggccagtac
ctggccattgtgagcgaggagcctgctttggaggtggtgaacctgaggacaggggccaac
ctggggaagcaggtgctgcgtacctgccccgtggacgtggcctggaacccgaggaggcac
atccttgctttcccgggggcctcggagcgggacgggagtggcgcggagcatgggctggtg
gagctgagatacttgccggagcagggtcaatcctga

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