KEGG   Auxenochlorella protothecoides: F751_6990
Entry
F751_6990         CDS       T04132                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB9
  KO
K03017  DNA-directed RNA polymerase II subunit RPB9
Organism
apro  Auxenochlorella protothecoides
Pathway
apro03020  RNA polymerase
apro03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:apro00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    F751_6990
  09124 Replication and repair
   03420 Nucleotide excision repair
    F751_6990
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:apro03021]
    F751_6990
   03400 DNA repair and recombination proteins [BR:apro03400]
    F751_6990
Transcription machinery [BR:apro03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     F751_6990
DNA repair and recombination proteins [BR:apro03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      F751_6990
SSDB
Motif
Pfam: Zn_ribbon_TFIIS Zn_ribbon_RPB9 Zn_ribbon_IS1595 Ribosomal_S27e DUF2387 eIF-5_eIF-2B
Other DBs
NCBI-GeneID: 23618381
NCBI-ProteinID: XP_011401236
UniProt: A0A087SR69
LinkDB
Position
Unknown
AA seq 116 aa
MSGPKLRFCPESNDLLYPKEDRANKRLVYHCRSCPYVEAADPSEWCVFRNEVQHTSKEKL
VVLQDVRSDPTLPRTKDVRCPACANNEAVFFSASTEEGMTLFFNCIKCGHRWRDYV
NT seq 351 nt   +upstreamnt  +downstreamnt
atgtcgggccccaaactaagattctgtcccgaaagtaacgaccttctgtaccccaaggag
gatagagccaacaaacgactcgtatatcactgtcggagttgtccatatgtcgaggctgca
gaccccagcgagtggtgtgtcttccgcaatgaggtgcagcacacctccaaggagaagctg
gtggtgctccaggacgtgcgctccgatccgaccctgccgcgcaccaaggacgtccgctgc
ccggcatgcgctaataacgaggcggtgttcttctcggcatccacggaggagggcatgacc
ctcttcttcaattgcataaagtgcggccaccgctggcgtgattacgtgtga

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