Aminirod propionatiphilus: KIH16_04190
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Entry
KIH16_04190 CDS
T10987
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
aprp Aminirod propionatiphilus
Pathway
aprp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aprp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KIH16_04190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aprp03019
]
KIH16_04190
Messenger RNA biogenesis [BR:
aprp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KIH16_04190
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
RNase_J_C
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
DUF7684
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
QVL36975
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Position
975038..976765
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AA seq
575 aa
AA seq
DB search
MGGDALAKSKTRRRRSGKSASGAADLRVIPLGGLGQIGKNCTVFEYGDDLVMVDCGLMFP
EEDMLGIDYVIPDVSYVEERRENLRAIVVTHGHEDHIGALPFVLPRLDVPVYATKLTLGM
IRNKLKEAAPAYEPRFHEIRAGDVVELGAFSFEFIAVCHSIPDGVGYALHTPLGTVVHTG
DFKLDPTPIDGRVTDYGTFAELGRRGVLLLMSDSTNVERSGFTASERLVGRTLEELFRLH
RNRRIVLATFASNLHRAQQVFDVAARFNRKVVLMGRSMINNVALARELGYVSVDESLLIA
PQDVDKIPHNRLVVLTTGSQGEPFSGLVLMSKGEHHHIKLSEKDVVVVSATPIPGNEKLV
SHTVNRLFACGCDVVYERERQIHVSGHAAQEELKMMLSIVRPRYFVPVHGEYRHLVRHNQ
LAQDTGVPARNTFLLLNGDVLQISADKAQIKGNVPFGSILVDGRVMGELEGSVMQERRDL
SEEGILTVSVVLSTDGVLLRPVVTESRGFLHVDMAEELHREVRETVMKLVETAARKGSID
EEDLAQKIRGRVKDLVRRHTRSYPVIMPLISLVEV
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atgggaggtgatgccttggctaaatcaaagacaagaaggcgtcgaagcggcaagagcgct
tccggtgccgccgatctgcgcgtcattcctttggggggactggggcagataggcaagaac
tgcacggtattcgagtacggagacgatctggtgatggtcgactgtggactcatgtttccc
gaagaggacatgttgggcatcgattacgtcatccccgacgtgagttatgtcgaagagcgc
agggagaatctccgggccatcgtggtcacccatggccacgaggaccacatcggggccctt
cccttcgtccttccccgtctcgacgtccccgtttatgccacgaaactgactctgggcatg
atccgcaacaagctcaaggaggcggcccccgcctacgagccccgctttcacgagatccgc
gccggcgatgtcgtcgagcttggcgccttcagcttcgagttcatcgccgtctgtcactcc
attcccgacggcgtcggctatgccctccacacgccgctcgggacggtggtccacacggga
gatttcaagctcgatcccacgcccatcgacggccgggtcaccgattacggcaccttcgcc
gagctggggcgaaggggtgtcctgcttctcatgtcggactcgacgaacgtcgagcgttcc
ggctttaccgcctcggagcgcctcgtgggacggaccttggaggaacttttccgccttcac
cgtaacagacgcatcgtcttggccaccttcgccagcaaccttcaccgggcccagcaggtc
ttcgacgtggcggcccgtttcaaccgcaaggtcgttctcatggggcggagcatgatcaac
aacgtcgccctggcacgggagctgggctacgtcagcgtcgacgagagccttttgatcgct
ccccaggacgtggacaagatcccccacaatcgcctcgtggtcctcacgacggggagtcag
ggagagcccttctcgggcctcgttctcatgagcaagggggagcaccatcacatcaagctc
tccgaaaaggatgtcgtcgtcgtcagcgccacgcctattccgggcaacgagaagctcgtg
agccataccgtcaaccgtctcttcgcctgcggctgcgacgtcgtctacgagagggagagg
cagattcacgtctcgggccatgcggcgcaggaggagctgaagatgatgctctccatcgtc
aggccccgctacttcgtccccgttcacggcgaataccgtcacctggtgcgccacaatcag
ctggcccaggacacgggagtgccggcccggaacacctttctcctcctcaacggcgatgtc
ctccagatcagcgccgataaggcccagatcaaagggaacgtccccttcggcagcatcctc
gtcgacggccgggtcatgggcgagctggaggggagcgtcatgcaggagcgacgcgatctc
tccgaagaggggattctcaccgtctccgtcgtcctctccaccgacggagtgcttctccgt
cccgtcgttaccgagagtcgaggcttcctccatgtcgatatggccgaggagctccatcga
gaggtccgcgagacggtgatgaaactcgtcgagacggctgcccgcaagggttccatcgac
gaggaggatctggcccagaagatcagaggtcgcgtcaaggacctggtccgccgccacacg
cgcagctacccggtaatcatgccgttgatttccctcgtggaggtctag
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