Amycolatopsis sp. FBCC-B4732: MUY14_03425
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Entry
MUY14_03425 CDS
T08335
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
aprt
Amycolatopsis sp. FBCC-B4732
Pathway
aprt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aprt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MUY14_03425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aprt03019
]
MUY14_03425
03009 Ribosome biogenesis [BR:
aprt03009
]
MUY14_03425
Enzymes [BR:
aprt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MUY14_03425
Messenger RNA biogenesis [BR:
aprt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MUY14_03425
Ribosome biogenesis [BR:
aprt03009
]
Prokaryotic type
rRNA processing factors
MUY14_03425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
Motif
Other DBs
NCBI-ProteinID:
UOX89701
LinkDB
All DBs
Position
935819..939004
Genome browser
AA seq
1061 aa
AA seq
DB search
MSNAETPAEHTGGNPATPTTGPLADLPPRIRVHALAKLLESHSRDILVKLTELGESVRSA
QSSVTREVALKVAGAFTSAEGEQAAAAPVEAAAAEEQPARDNADQAPPADQGSARDGADR
GQGDADQAQPATQGTAARGRRVSRGRGEAAQAATSQAQPADQATGSTREAAPAVPPAPEV
PAAEAEKPRPRQKTRAHLPVFAAPSPVFLPPEPAERAVKPARKPADPFAEPEPRPEPRRE
ARHEAEAVEEEAEDTTPATDANADDDEDAGSRRRRRRGRRGRGRGKGADGSDEGAENDDD
QADEQPRRRNRNADEKPEADAEEAEEAAGPAAESDSDDDGEGGSKRRRRRRRRKGSDGDD
AETTDDPPNTVTHVRQAKAEQAERERPARDEVRSVRGSTRLEAKRQRRRDGREAGRRRAP
ILSEAEFLARREAVERTMVVAEKGDSTQIGVLEDGVLVEHFVTQSGSGSIVGNVYLGRVQ
NVLPSMEAAFIDIGRGRNAVLYAGEVDWDAAGLEGKARKIEQALSTGDSVLVQVTKDPVG
HKGARLTTQISLPGRFLVYVPAGGATGISRKLPENERRRLKDILKRIVPEDAGVIIRTAS
EGIGEEELGRDVDRLKAQWDVIKEKAAAGSGKKGGAPTMLYEEPDLLVKVVRDLFTEDFA
KLEIQGNRSWETINDYVRHVAPELTERVKRYTGTGDVFADHRIDEQITKALDRKVWLPSG
GYLVIDRTEAMTVIDVNTGKFTGSGGNLEETVTRNNLESAEEIVRQLRLRDIGGIIVIDF
IDMVLESNRELVLRRLTECLGRDRTRHQVAEVTSLGLVQMTRKKIGTGLLEAFSTPCEHC
KGRGVLVSTEVQRTGGGAGHSHGGNGNGGNGGNGGGGGGEKSSRRSRGRGKGEEAAKEQA
EAAKAEVHAVPSPEQRESIASAVAAMANASKVVKEHDHGAENGHVPEPAKEVADVPATTE
ADEAPVAAERPVEPAQEVAGTPVTTEADEVPVPQDEEPVVERSSAPEPAEEPVNESSEAA
EPVAEPEVSVPEPAVRSTRRRPRRAASRPAGPPVHASDQSS
NT seq
3186 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaacgcggaaacacccgccgagcacaccggcgggaatcccgccacacccacgacc
gggccactggccgacctgccgccccgcatccgggtgcacgcgctggccaagctgctcgag
tcgcacagccgggacatcctcgtcaagctcaccgagctgggcgaaagcgtgcgcagcgcg
cagtcgagcgtgacgagggaagtcgcgctcaaggtggccggagccttcacctcggccgaa
ggtgagcaggcagccgccgcgcccgtggaagccgcggccgccgaagagcaacccgcccgg
gacaacgccgaccaggccccgcccgccgaccagggctccgcccgcgacggcgccgaccgg
ggccagggcgacgccgaccaggcccagcccgccacccagggcaccgccgcccgaggccgc
cgcgtgagccgtggccgcggcgaggccgcccaggccgcgaccagccaggctcagcccgcc
gaccaggccaccggcagcacccgcgaggccgcccccgcggtcccgccggcccccgaggtc
ccggcggccgaggccgagaagccgcgcccgcgccagaagacccgcgcccacctgccggtc
ttcgccgcgccgtcgccggtgttcctgccgccggagccggccgagcgcgcggtcaagccc
gcgcgcaagccggccgacccgttcgcggagcccgagccccgcccggagccgcgtcgcgag
gctcgccacgaggccgaggccgtcgaggaagaggccgaagacaccacccccgccaccgac
gcgaacgccgatgacgacgaggacgccggcagccgccgtcgccgtcgccgcggccgtcgt
ggccggggccgcggcaagggcgccgacggcagcgacgagggcgccgaaaacgacgacgac
caggccgacgagcagccgcgccgccggaaccgcaacgcggacgaaaagcccgaagcggac
gccgaagaggccgaggaagccgccggtccggccgcggagtccgacagcgacgacgatggc
gagggcggcagcaagcgccgtcgccgccgccgtcgccgcaagggctcggacggcgacgac
gccgagaccaccgacgacccgcccaacacggtcacccacgtccgccaggccaaggccgag
caggccgagcgcgagcgcccggcgcgcgacgaggtgcgcagcgtccgcgggtcgacccgc
ctggaggccaagcgccagcgccgccgcgacggccgcgaggcgggccgccgccgcgccccg
atcctgtccgaggccgagttcctcgcccgccgcgaggccgtcgagcgcacgatggtcgtc
gccgagaagggcgactcgacgcagatcggcgtgctcgaagacggcgtgctggtcgagcac
ttcgtgacgcagtcgggctccggctcgatcgtcggcaacgtctacctcggccgcgtccag
aacgtgctgccgagcatggaagccgcgttcatcgacatcggccgcggccgcaacgccgtg
ctctacgccggcgaggtcgactgggacgccgccggcctggagggcaaggcccgcaagatc
gagcaggcgctgtccaccggcgactccgtgctggtccaggtcaccaaggacccggtcggg
cacaagggcgcccggctgaccacgcagatctcgctgcccggccgcttcctcgtctacgtg
cccgcgggcggcgccaccggcatctcccgcaagctgccggagaacgagcgccgccggctc
aaggacatcctcaagcggatcgtcccggaggacgcgggcgtcatcatccgcaccgcctcc
gagggcatcggcgaggaggagctgggccgcgacgtcgaccgcctgaaggcgcagtgggac
gtcatcaaggagaaggccgccgccggttccggcaagaagggcggcgcgccgaccatgctc
tacgaagagcccgacctgctggtcaaggtcgtgcgtgacctcttcacggaggacttcgcc
aagctggagatccagggcaaccggtcgtgggagaccatcaacgactacgtccggcacgtc
gcgccggagctgaccgagcgggtcaagcgctacaccggcaccggtgacgtgttcgccgac
caccggatcgacgagcagatcaccaaggcgctcgaccgcaaggtctggctgccgagtggc
ggttacctggtcatcgaccgcaccgaggcgatgacggtcatcgacgtcaacaccggcaag
ttcaccggatcgggtggaaacctcgaggagacggtgacccgcaacaacctggagtcggcg
gaggagatcgtccgccagctccggctccgggacatcggcggcatcatcgtcatcgacttc
atcgacatggtgctcgagtcgaaccgcgagctggtgctgcgccgcctcaccgagtgcctc
ggccgcgaccgcacgcgccaccaggtcgccgaggtcacttcgctcggcctggtccagatg
acccgcaagaagatcggcaccggcctgctggaggcgttctccacgccgtgcgagcactgc
aagggccggggtgtgctcgtctcgaccgaggtgcagcgcaccggcggcggggccggccac
tcccacggtggcaacggcaacggcgggaacggtggcaacggcggcggtggcggcggggag
aagagctcccgccggtcgcgtggccgcggcaagggcgaggaggccgccaaggagcaggcc
gaagccgccaaggccgaggtccacgccgtcccgtcgccggagcagcgcgagtcgatcgcg
tccgcggtggcggcgatggcgaacgcctcgaaggtcgtcaaggagcacgaccacggcgcc
gagaacgggcacgtcccggagcccgccaaggaggtcgcggacgtcccggccaccacggag
gcggacgaggcgccggtggcggccgagcggccggtcgagcccgcccaggaggtcgccggc
accccggtgaccaccgaggcggacgaggtcccggtgccgcaggacgaggagccggtggtc
gagcgctcttcggccccggaaccggccgaagagccggtcaacgagtcttcggaggccgcc
gagccggtcgccgaacccgaggtcagcgtgcccgagccggccgtgcgctccacccggcgc
cgtccgcgccgggcggcgtcgcggcccgcgggcccgccggtgcacgcctcggaccagagc
agttga
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