Candidatus Azobacteroides pseudotrichonymphae: CFPG_048
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Entry
CFPG_048 CDS
T00792
Name
(GenBank) putative ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
aps
Candidatus Azobacteroides pseudotrichonymphae
Pathway
aps03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aps00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFPG_048
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aps03019
]
CFPG_048
03009 Ribosome biogenesis [BR:
aps03009
]
CFPG_048
Enzymes [BR:
aps01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CFPG_048
Messenger RNA biogenesis [BR:
aps03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CFPG_048
Ribosome biogenesis [BR:
aps03009
]
Prokaryotic type
rRNA helicases
CFPG_048
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
BAG83311
UniProt:
B6YQ39
LinkDB
All DBs
Position
complement(59114..60760)
Genome browser
AA seq
548 aa
AA seq
DB search
MKTFEELGIIPDILKAITEIGYENPMPIQEKVIPYLLGKGNEVIALAETGTGKTAAFGLP
ILQQIQIHHEHPQAVVLCPTRELCLQIANDINNYSKYLKKLKILPIYGGSNIESQIKALR
GGVHIVVATSGRLIDLIKRGAVDLQYVRNVVLDEADEMLSVGFSESIDEILRHIPEDRNM
LLFSATMPLEISWITKKYMRNPHEIVIGKKNSGGRTVRHVYYMVSVSDRYFLLKRLVDYH
PNIYGIVFCRTKNETQEIANFLIRDGYNVDALHGDLSQSQRDYIMQKFRLHNIQLLVATD
VASRGLDVDGLSHIINYGLPSDIESYIHRSGRTGRAGKTGTSIAIIHLKEKFKIRAIERC
INKTFEKGIIPSGKEICKKRLFHFIDKLEGVEVNEGEIKDIFPSIYYKLDWLSKEDIVKR
IISNEFNRLIDYYQDVNEIKIPKEKDIRNKRRLEAKTICTFKKDNRNLPSEGYMWLFINL
GRVDGLIPSKLIGLLNDNISGRKVNVGKIDLMRKFTFFEVKKTDKQRVIQNLNNIEALGK
RVLVEGRH
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaacttttgaagagttaggcatcatccccgatatactgaaagcaattacagaaata
gggtatgaaaatcctatgccaatacaagaaaaggtaataccatatttacttggtaaaggc
aacgaggttattgcattagcagaaacaggaacaggtaaaactgcagcgtttggactccct
attcttcagcaaatccaaatacatcatgaacaccctcaagcagtagttctttgtccaaca
cgggaattgtgtttacaaatagctaatgacattaataattattctaaatatttgaaaaaa
ctaaaaatattgcctatatacggcggttcaaatattgaaagtcagataaaagcattgcgg
ggaggtgttcatattgttgtggctacatcggggcgtttaatagatttgattaagcgtgga
gcggtagatttgcagtatgtgagaaatgttgtcttggatgaagcagatgaaatgttgagt
gtgggattttctgaaagcattgatgagatattacgtcatattcctgaagatagaaatatg
cttcttttttcagcaacaatgccgctagaaatttcttggattacaaaaaaatatatgcgt
aatccgcacgaaattgtcattggaaaaaagaattcaggaggaagaactgtgcgacatgta
tactacatggtatctgtttcagataggtattttttgttgaaaagattagtggattatcac
cctaatatttatggtattgtgttttgtcgcacaaaaaatgagacacaggaaatagctaat
tttttaataagagacgggtataatgttgatgctttacatggtgatttatcgcaatcccaa
cgagattatataatgcaaaaatttcgtttacataatattcagcttttagtagcgactgat
gtggcgtcgcgtgggctagatgtagatgggttaagtcatattattaattatgggctacct
agcgatatagaatcttatatacatcggagtggacgtacaggaagagctgggaaaacaggg
acttctattgcaattatccatttaaaggaaaaatttaaaataagagcaatagaaagatgc
attaataaaacatttgaaaaagggattattccgtctgggaaagaaatttgtaaaaagaga
cttttccattttatagataaattggaaggagttgaagtgaatgaaggagaaataaaagat
atttttccttctatttactataaattggattggttgagtaaagaagatatcgttaagcgt
attatttcaaatgagtttaatcgtttgatagattattatcaagatgtgaatgaaataaaa
atcccaaaagagaaagatataagaaacaaacgtcgtctggaagcaaaaactatttgtact
tttaaaaaggataataggaatttgccttcagaagggtatatgtggttatttattaatctt
ggcagagtagatggtttaatcccatcaaaattaattgggttattaaatgataatatatca
ggacgtaaggttaatgttgggaaaatagatttgatgagaaaatttactttttttgaagtg
aaaaagacagataaacaacgggtaattcaaaatttgaataatattgaggctctaggcaaa
agagtattggtggaggggaggcactaa
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