Candidatus Azobacteroides pseudotrichonymphae: CFPG_203
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Entry
CFPG_203 CDS
T00792
Name
(GenBank) putative ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
aps
Candidatus Azobacteroides pseudotrichonymphae
Pathway
aps03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aps00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFPG_203
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aps03019
]
CFPG_203
03016 Transfer RNA biogenesis [BR:
aps03016
]
CFPG_203
Enzymes [BR:
aps01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CFPG_203
Messenger RNA biogenesis [BR:
aps03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CFPG_203
Transfer RNA biogenesis [BR:
aps03016
]
Prokaryotic type
tRNA degradation factors
CFPG_203
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
TnpV
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
BAG83466
UniProt:
B6YQJ4
LinkDB
All DBs
Position
complement(267243..269003)
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AA seq
586 aa
AA seq
DB search
MIKKKYKRQIKFFKQLKEEKIFQRILNLFKAFPREIFDCQQISYRIDPTSQTNSLIIVRV
LEILCKKKILVKIDKSKYQLKNTKSTIPSIQDEYNLPCKYPEEAEKAAQKIPNHITLTEI
SNREDFRETLTFTIDPQNAKDFDDALSIKKLSNNFYEIGVHIADVTHYIKPDSSIDKEAL
KRGTSIYLVDKVIPMLPESLCNEVCSLRPNEDKLCFSVIFEMDGKAKIHNYRIRRTIIRS
DHRFTYEEAQEIIERSFATNYEDCSLNSSVFTLNCLAKILREKRFSNGSIDFVQREIQFD
LDREGNPLDIYLKKNNEANQLVEEFMLLANKTIAEIVGKVPKNKRAKPFVYRVHGLPDIE
KIKNLKQLVRSFGYKLNIKRINNETSKNISSLFKQVQGTREQNLIETIALRTMEKAIYTT
ENVGHYGLAFKYYTHFTSPIRRYPDMIVHRLLEKYLNRKYSVSKKSLERLCKHCSEQESI
AIQAERASIKAKQVEFMSTKVGNTFDGVISNVTEWGLYVELGNGCEGLIPMRYLDDDFYE
LDEKTYRLIGKTKKHIYCLGDPLQIRVIHSNLEKRQLDFAPISFKK
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atgataaaaaaaaaatataagcgccaaataaaatttttcaaacaactaaaagaagaaaag
atctttcaaagaatactaaatctttttaaagctttcccaagagaaatatttgattgtcaa
caaattagttataggattgatccaacttcacaaactaatagcttaataatcgtccgcgtt
ttggaaatactttgcaaaaaaaaaattttagttaaaatagataaaagtaaatatcagttg
aagaacactaaaagcacaataccatctattcaagatgaatacaatttaccatgtaaatat
cccgaagaagcagaaaaagcagcacaaaaaattccgaatcatattactctaacggagatc
agcaatcgtgaagattttcgagaaacacttacttttacaattgatccgcaaaatgctaaa
gattttgatgatgctttatccattaaaaaactatccaacaatttttatgaaataggtgta
catatagctgatgtaactcactacataaagcctgatagcagtatagataaagaggcattg
aaaagagggacttccatatatttggtagataaggttataccaatgcttccagagtcgcta
tgcaatgaagtttgttcgttgcgcccgaacgaggataagctgtgtttttctgttattttc
gaaatggatgggaaagctaaaatccacaactaccgtattcggcgaaccattatacgttcc
gatcatcgtttcacttatgaggaagctcaagaaataatagaaagaagttttgctacaaat
tatgaggattgctcattaaatagttctgtttttactttaaattgtctagctaaaatctta
cgagagaagagattttcaaatggttcgattgattttgtccaaagagagattcaattcgat
ttggatagagaagggaatcctttagatatttatttaaaaaaaaataacgaagcgaatcaa
ttagtggaagagtttatgctattggctaataaaacaattgctgaaatagttgggaaagta
cctaaaaataaaagggcgaaaccatttgtttatagagtacatggtttgccagatatagaa
aaaataaaaaatcttaaacagctagttcgaagttttggatataaattgaatattaagaga
ataaataatgaaacgtccaaaaatattagctctctatttaagcaagtacaaggaacaaga
gaacaaaatttaatcgaaactattgctcttcgaacgatggaaaaggccatttatacaact
gaaaatgttggacattacggattagcattcaaatattatactcattttacatcacctatt
cgtcgttaccctgatatgatagttcaccgactgttggaaaaatatttaaataggaaatac
tcggtttctaaaaaatctttagaaaggctttgcaaacattgttctgaacaagaatcaatt
gctattcaagctgaaagagcttctattaaagctaaacaggtagaatttatgtctaccaag
gtaggaaatacgtttgatggtgtgatatcaaatgtaacagagtggggattgtatgtggaa
ttagggaatggatgtgagggattgattccaatgcgctatttggatgatgatttttacgaa
ttagatgaaaagacttacagattgataggtaaaacaaaaaaacatatttactgtttaggc
gatcctttacaaataagagtaatacatagtaatttggagaaacgtcaattagattttgct
cctatatctttcaagaagtga
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