Acetobacter pasteurianus IFO 3283-07: APA07_09280
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Entry
APA07_09280 CDS
T01813
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
apu
Acetobacter pasteurianus IFO 3283-07
Pathway
apu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
apu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
APA07_09280 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
apu03021
]
APA07_09280 (rpoC)
03400 DNA repair and recombination proteins [BR:
apu03400
]
APA07_09280 (rpoC)
Enzymes [BR:
apu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
APA07_09280 (rpoC)
Transcription machinery [BR:
apu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
APA07_09280 (rpoC)
DNA repair and recombination proteins [BR:
apu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
APA07_09280 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Biotin_lipoyl_2
Apocytochr_F_C
DUF5789
Motif
Other DBs
NCBI-ProteinID:
BAI05174
LinkDB
All DBs
Position
969117..973292
Genome browser
AA seq
1391 aa
AA seq
DB search
MNELMKILGQTGQAMTFDQIKIQLASPEQIRSWSYGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKFRGIICEKCGVEVTLAKVRRERMGHIQLASPVAHIWFLKSL
PSRIGLMVDMTLKDLEKVLYFESYLVLEPGTSPLKQYSLLTEEQYLDAMDEYGDEGVEVG
IGAEAIKKVLERIDCDAEKVELRQELKETTSEAKRKKLVKRLKLIEAFAESGSRPEWMIL
DLVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIVRNEKRML
QEAVDALFDNGRRGRAITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP
ELKLHQCGLPKKMALELFKPFIYAKLEKYGHATTIKAAKRMVEKERPEVWDILEEVIREH
PVMLNRAPTLHRLGIQAFEPVLVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDIVLGLYYLSLETPEFKVTPDRCEYDETTGALTKE
GAPSFSSIGEVEYALSAGALKLHDKIRARFQKIGADGKVTYETAVTTPGRVLIAQILPQH
EAVPFSLINRQLTKKAVSDVIDTVYRHCGQKEAVIFCDRLMALGFRHAAKAGISFGKDDM
IIPPEKKELVDRTAAEVKEFEQQYQDGLITAGERYNKVVDAWSRCTDEVQAAMTKEISRQ
EVGKQINSVWMMSHSGARGSPAQMKQLAGMRGLMAKPSGEIIEQPIIANFKEGLSVLDYF
TSTHGARKGLADTALKTANSGYLTRRLVDVAQDSIIIEEDCGSERGLTVRAVMDGGEVVA
SLSERILGRTVASDVVVPGTGEVIVPRNHLIDEADAERIEKSGVETVHIRSVLTCDSRVG
VCGRCYGRDLARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQRGAEQSMIEAS
RDGHVVIRNRNVVHNSQNVPIVMARNCEILLSDDNGVEKARYRVPYGARLLTEEGAKVAR
GQKLAEWDPYTLPIITEKAGKVEYLDLIDSITLVERMDEVTGLTSKVVVDYKQAGKGVDL
RPRLQLKDANGDVVKLDNGADARYFLSPETLLSVENGTEVNAGDVLARLPREGSKTRDIT
GGLPRVAELFEARRPKDHAIIAEMEGRVEFGKDYKSKRRVIVKNDETGEEQEYLIPKGKH
ISVQEGDFVEKGDPLVDGPRVPHDILKVMGVEALSDYLINEIQDVYRLQGVKINDKHIEV
IVRQMLQKVEILEPGDTTYLIGETVDRIEFEAENAKCLKAGERPAQGMPVLQGITKASLQ
TQSFISAASFQETTRVLTEAATAGKVDKLMGLKENVIVGRLIPAGTGSVMKRLRAIAAEQ
DRQRVGRSAAE
NT seq
4176 nt
NT seq
+upstream
nt +downstream
nt
atgaatgagctcatgaaaattcttggccagaccggccaggcgatgacgtttgatcagatc
aagattcagctggcatcgcccgaacaaatccgttcctggtcttatggcgaaatcaagaag
cccgagaccatcaactatcgtacgttcaagccagaacgggatggcctgttctgcgcgcgt
atttttggtccgatcaaggattatgaatgcctttgcggtaaatacaagcggatgaaattc
cgcggtattatctgcgaaaagtgcggtgttgaagttacgctggccaaagtgcgtcgtgaa
cgcatgggccatattcagcttgccagccccgttgcccatatctggttcctgaagtctctg
cctagccgtatcggcctgatggttgatatgacgctgaaagatctggaaaaggtgctttac
tttgaaagctacctggttctggaacccggcacgtctccgctgaagcagtactccttgctg
acggaagaacagtaccttgatgccatggacgaatatggcgatgagggtgttgaagtcggt
attggtgcagaagccattaaaaaggttctggagcgcattgactgcgatgccgaaaaggta
gagctgcgccaggaacttaaggaaacaacttcagaagctaagcgcaaaaagctcgttaag
cgcctgaagctgattgaagcgtttgcagaaagcggttcccgcccagaatggatgattctg
gatctggttccggttattccgcctgatctgcgtccgttggtgccgctggatggtgggcgt
tttgcaacgtctgatctgaacgatctgtatcgtcgcgtcatcaaccgtaataaccgtctg
aagcgcctgatggagctgcgtgcgcccgatattatcgtgcgtaacgaaaagcgtatgctt
caggaagctgtggatgcgctgttcgataacgggcgtcgtggccgggctatcacgggtgct
aacaagcgtccgctgaaatccctgtccgatatgcttaaaggtaagcagggtcgtttccgt
cagaacctgctgggtaagcgcgtcgattactctggccgttccgttattgtggtgggccca
gaacttaagctgcaccagtgcggtcttcccaagaagatggctctggaactgttcaagccg
ttcatttacgccaagctggaaaaatacggtcacgccaccaccattaaggctgcaaagcgg
atggtggaaaaagagcgcccggaagtttgggatattcttgaagaagttatccgcgaacat
ccggttatgcttaaccgtgcgcctacgctgcaccgtttgggcattcaggcgtttgaaccg
gtgctggttgaagggaaggctattcagctgcacccgctcgtctgcaccgcgtttaacgca
gactttgacggtgaccagatggctgtgcacgtgccgctgagccttgaggcccagcttgag
gcacgtgtgctgatgatgtccaccaacaacattctcagcccggcaaacggtaagccgatt
attgtgccttctcaggatatcgttctagggctgtattacctcagcctcgaaacacctgaa
ttcaaggtcacgccggatcgttgtgagtatgacgaaacaacaggtgctctgaccaaagaa
ggtgcgccgtctttctcttccatcggtgaagtggaatatgcgctgagcgctggcgcactg
aagctgcatgataaaattcgtgcacgcttccagaagatcggtgcagatggcaaggtcacc
tacgaaacagccgtgaccacgcccggtcgtgtgctgattgcgcagatcctgccgcagcat
gaagctgtgccgttctccctcatcaaccgtcagctcaccaaaaaggctgtgtctgacgtt
attgatacggtgtaccgtcactgtggtcagaaagaagccgttatcttctgtgaccgtctg
atggctttgggtttccgtcacgctgctaaggctggtatttccttcggtaaggatgacatg
atcatcccgcccgaaaagaaagaactggttgatcgcacggctgccgaagtgaaagagttt
gaacagcagtatcaggatggtctgatcacggctggcgaacgctacaacaaggtggtcgat
gcatggtcacgttgcacggacgaagtgcaggcggccatgaccaaagagatttcccgtcag
gaagttggcaagcagatcaactccgtgtggatgatgagccactccggggctcgtgggtcg
ccggctcagatgaagcagctcgccggtatgcgtggtctgatggccaagccatctggtgaa
attattgaacagccgattattgccaactttaaagaaggcctgtcggttctcgattacttc
acctctacccatggtgcacgtaaaggtctggccgataccgcgcttaaaaccgctaactcc
gggtatcttacccgtcgtctggtggacgtggcgcaggacagcatcattattgaagaagat
tgtggtagtgagcgcggtctgacggtgcgtgcagttatggacggtggggaagttgtggct
tctctgtccgaacgtatccttgggcgtactgttgcttctgatgtggtggttccgggcacc
ggtgaagttatcgtgccgcgcaatcatctgattgatgaagctgatgcagagcggattgaa
aaatccggcgtggaaacggttcatatccgttctgtgctgacctgtgatagccgcgttggt
gtctgcggtcgctgctatgggcgtgatcttgcacgcggcacgccggtaaacatcggtgaa
gctgtgggtgttattgctgctcagtccattggtgagcccggcacacagctgacaatgcgt
accttccatattggtggtgcggcgcagcgtggtgcggaacagtccatgatcgaggcctct
cgtgatggacatgttgtgatccgtaaccgcaacgttgtgcataacagtcagaacgtgccg
atcgtgatggcacgtaactgtgaaatccttctgtctgacgacaacggggtcgaaaaagcc
cgttaccgtgtgccgtatggtgcacgcctgctgacagaagagggtgcaaaggttgctcgc
ggtcagaagctggctgagtgggatccgtacacccttccgatcatcacggaaaaagccggt
aaggttgaatacctggatctgattgactccattacgcttgttgagcgtatggacgaagtg
acaggcctgacatccaaagtggtggttgactataagcaggcaggtaagggggtggatctg
cgcccacgtctgcagcttaaagatgccaatggcgatgtggtgaagctagataacggtgca
gatgcccgttacttcctctctcccgaaacgcttctgtctgttgaaaacggcacggaagtg
aacgccggtgacgttctggcccgtctgccacgtgaagggtccaaaacccgtgatattacg
ggtggtctgccgcgcgttgctgaactgtttgaagcacgtcggcctaaggatcacgctatt
atcgcggaaatggaaggtcgcgttgaattcgggaaggactacaagtccaagcgccgtgtt
atcgtgaagaacgatgaaacgggtgaggaacaggaatacctgatcccgaaaggcaagcac
atttccgttcaggaaggtgactttgtggaaaaaggtgatccgctggtcgatggtccacgg
gtgccccacgatatcctgaaggtgatgggtgttgaggctctgtctgattacctgatcaac
gaaattcaggatgtgtatcgtcttcagggtgtgaagattaacgataagcatattgaagtg
atcgtgcgtcagatgcttcagaaggtcgaaattctggagccgggtgacacgacgtacctg
attggtgaaaccgtggaccgtattgagttcgaggctgaaaatgccaagtgcctcaaggcg
ggtgaacggccagctcagggtatgccggtgctgcagggtatcaccaaggcctctctgcag
acacagtccttcatctctgctgcatcgttccaggaaaccacacgcgtgctcacagaagct
gctacggcagggaaagtggataagctgatgggcctgaaggaaaacgtgattgttggacgt
ctgattccggcaggcacaggcagtgttatgaagcgtctgcgggccattgcggcagagcag
gatcgtcagcgtgttgggcgttctgcggccgaataa
DBGET
integrated database retrieval system
