Acetobacter pasteurianus IFO 3283-07: APA07_09910
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Entry
APA07_09910 CDS
T01813
Symbol
rpoD
Name
(GenBank) DNA-directed RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
apu
Acetobacter pasteurianus IFO 3283-07
Pathway
apu02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
apu00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
APA07_09910 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
apu03021
]
APA07_09910 (rpoD)
Transcription machinery [BR:
apu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
APA07_09910 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
BAI05239
LinkDB
All DBs
Position
1036684..1038702
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AA seq
672 aa
AA seq
DB search
MRAGRSRSGMATKTASTNAAQEQDGDTTLLDTRSSAVKKLIAKGRERGCITFDELNAVLP
QDKMSSEQIEDIMAVLSEMGIQVVENEDNDNEEAEPKKAAAESDDAEEEAEAETEAEAES
PTGNVNAESVGRTDDPVRMYLREMGTVELLSREGEIAIAKRIEAGRDEMIGGLCESPLTF
RAIISWHEMIRNNEMLLRDIVDLEAMQSGGNPLEEGGDGTFNEAESDSESEEAEEPEAEG
EGDIESEGSGLSLSALEEKLKPEILAHFDEIEPLYAELRKLQVQRIEALTSGEDVDGNFE
ESYVALREKLVGKVEQVHLHNNRIEDLVAQLKQMFQKLNMLEGRMLRLAESCRVSREDFL
LKYRGRELDPGWMDMVSGLSGRSWKNFVAKHANTVVGLRDQVAQLAQETGLPIGEFRRVY
ATVARGERDSARAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYR
RGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTSRQMLHEIGREPAPEE
LAEKLGMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKTAIIPLDAAIQTNLRE
ATTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFNVTRERIRQIEAKALRKLKHPS
RSRKLRSFLDDN
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgcgggcggggaggagcaggtctggcatggcgacaaaaacggcatcaaccaacgcagcg
caggaacaggatggtgataccaccctgcttgatacgcggtcttctgcagtcaaaaaactg
attgccaaagggcgtgagcgcgggtgcatcacgtttgatgagctaaatgccgttctcccg
caggacaaaatgtcttctgagcagattgaagacattatggccgtgctgtctgaaatgggt
attcaggttgtcgagaacgaagataatgacaacgaggaagctgaacccaagaaagccgct
gctgaaagcgatgacgcagaggaagaagccgaggctgaaaccgaagcggaagccgaaagc
ccaaccggtaatgtaaatgccgaaagcgtaggccgtacggatgaccccgtgcgtatgtat
ctgcgtgaaatgggcacggtggaactgctctctcgtgagggcgaaattgccattgccaag
cggattgaggctggccgtgatgaaatgattggcggcttgtgtgaaagcccgctgacattc
cgcgccatcatctcttggcatgagatgatccgtaacaatgaaatgctgctgcgtgacatt
gtggatctggaagccatgcaaagtggtggcaacccgctggaagaaggcggagacggcacg
tttaacgaagccgaatccgattctgaatcggaagaagccgaagagccagaagccgagggc
gaaggcgatattgagagcgaaggcagtggcctttccctttctgcgctggaagaaaagctc
aagccggaaattcttgcgcattttgatgagatcgaaccgctttacgccgaactgcgcaag
ttgcaggtgcagcggattgaagccctgacatctggtgaagatgttgatggcaattttgaa
gaaagctacgttgccctgcgtgaaaagctggtgggcaaggtagagcaggttcacctgcac
aataaccggattgaagatctggtggcccagctcaagcagatgttccagaagctgaacatg
ctggaagggcgtatgctgcgtctggcagaaagctgccgtgtctcacgtgaagatttcttg
ctgaaataccgtggccgtgagcttgatccgggctggatggacatggtttccggcctgtct
ggtcgttcatggaagaactttgtggccaagcacgccaatacggtggtggggctgcgtgat
caggttgcacagttggcgcaggaaacgggtttgccaattggtgaattccgccgtgtgtat
gcaacggttgcgcgtggtgagcgtgattctgcgcgtgctaaaaaggaaatgattgaagct
aacctgcgcttggttatttccattgccaaaaaatacaccaaccgcggccttcagttcctt
gatctgattcaggaaggcaatatcggcctgatgaaggcggtagataagtttgaataccgc
cgtggctacaagttctccacctatgcaacgtggtggatcaggcaggcgattacgcgctcc
attgcggatcaggcccgtacaatccgtattccggtgcatatgatcgaaacgatcaataag
ctggtgcgcacctctcgccagatgttgcatgaaatcgggcgtgaacccgcgccggaagaa
ctggctgaaaagctgggtatgccgctggaaaaagtgcgcaaggtgctgaaaattgccaag
gagcccatctccctcgaaaccccgatcggggatgaggaagatagccatctgggtgatttc
atcgaggataaaacagctattatcccgctggatgccgctatccagaccaacctgcgtgaa
gccacaacccgcgttctggcctctcttaccccgcgtgaagaacgtgtgctgcgtatgcgc
tttggtattggcatgaacaccgatcacacgctggaagaagttggccagcagtttaacgta
acgcgtgaacgtatccgccagattgaagccaaggctctgcgtaagctcaaacatccaagc
cgtagccgtaagctgcgttccttcctggatgataactga
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