Alistipes putredinis: L6V35_05525
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Entry
L6V35_05525 CDS
T08021
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aput
Alistipes putredinis
Brite
KEGG Orthology (KO) [BR:
aput00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
L6V35_05525 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aput03021
]
L6V35_05525 (rpoC)
03400 DNA repair and recombination proteins [BR:
aput03400
]
L6V35_05525 (rpoC)
Enzymes [BR:
aput01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
L6V35_05525 (rpoC)
Transcription machinery [BR:
aput03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
L6V35_05525 (rpoC)
DNA repair and recombination proteins [BR:
aput03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
L6V35_05525 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_5
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
UKI38812
LinkDB
All DBs
Position
1038443..1041034
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AA seq
863 aa
AA seq
DB search
MSIKKDNKSNAGFSRISIGLASPEEILENSSGEVLKPETINYRTYKPERDGLFCERIFGP
VKDYECHCGKYKRIRYKVIVCARCGVEVTEKKVRRERMGHISLVVPVVHIWYFRSLPSKI
GYLLGIPTKKLESIIYYERYVVIQAGAAAAQGVANLDLLAEKEYLDILDALPKGNAQLDD
DDPNKFIAQMGAEAIYTLLKKVDLDSLSYSLRHKASTETSQQRKTEALKCLNVIESFRAS
KDINKPEWMVLKVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIKAP
EVILRNEKRMLQEAVDSLFDNSRKSNAVKTESNRPLKSLSDSLKGKQGRFRQNLLGKRVD
YSARSVIVVGPELKMHEMGIPKDMAAELYKPFVIRKLIERGIVKTVKSAKKIIDRKDPVI
WDILENVIKGHPVLMNRAPTLHRLGIQAFQPKLIEGKAMQLHPLACTAFNADFDGDQMAV
HLPLGNEAILEAQILMLGSHNILNPANGAPITVPSQDMVLGLYYITKPRAGAKGEGFVFY
GPEEAIIAYNEGRADLHATVKVMVDDIDKDGNPVRELKETTIGRIIFNQVVPKEVGYINE
LLTKKSLRDIISVVMKKAGADKAANFLDDIKNLGYQMAFRGGLSFNLDAVLIPEEKAALV
QRGYESVDEVMANYNAGLISNNERYNQVIDIWTTVNNDLTKILKNHLIADQQGFNPVYMM
LDSGARGSEAQIRQLSGMRGLMAKPQKSGAEGGQVIENPILSNFKEGLSVLEYFISTHGA
RKGLADTALKTADAGYLTRRLVDVAQDVIINEEDCGTLRGVTATAIKRNDTVVQTLYERI
LGRTAVNDVYHPLTGETHRRCRR
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atgtcaatcaaaaaggataataaatcaaacgcaggtttcagtaggatatccatcggactc
gcctctccggaagagattctggaaaattcgagcggcgaggtgctaaaacccgaaaccata
aactaccgtacctacaaaccggaacgtgatggtttgttctgcgagcgtattttcggtccg
gtgaaagattacgaatgtcattgcggtaagtacaaacgcattcgctacaaggttatcgtc
tgcgcccgatgcggtgtggaggtaacggaaaagaaagttcgccgcgagcgtatgggacac
atttcgctggtcgttccggtggtgcatatatggtatttccgttcgctgccgtccaagatt
ggttatcttctggggattcctaccaagaagctcgaaagcatcatatattatgagagatac
gtagtcattcaggccggtgcggcagcagcgcagggcgtggcgaatctcgacctgttggcc
gagaaggaatatctcgacattctggatgcacttcccaagggaaatgcccagctggatgac
gacgaccccaacaagttcatcgcacagatgggcgccgaggccatttacaccctgctcaaa
aaggtggatttggattcgctttcgtattctctgcgtcacaaggccagcaccgagacttcg
cagcagcgcaagaccgaagctctgaaatgtctgaatgtcatcgagtcgttccgcgcctcg
aaagacatcaacaagccggagtggatggtgctgaaagtgattccggtcattccgcccgag
ttgcgtcctttggttccgctggacggcggacgtttcgcgacgagcgatttgaacgacctc
taccgcagggtaatcatacgtaacaaccgcctcaaacgtcttatcgaaatcaaggcgccg
gaagtcattctgcgcaacgagaagcgtatgttgcaggaggccgtggattcgctgttcgac
aactcgcgcaagagcaatgcagtgaagaccgaaagcaaccgtcctctcaaatcgttgagc
gacagtcttaaaggtaagcagggccgtttccgtcagaaccttctcggtaaacgtgtggac
tactcggcccgttcggtcatcgtcgtgggtcccgagctgaaaatgcacgagatgggtatt
ccgaaggacatggcagccgagctttacaagccgttcgtcatccgcaagctcatcgagcgc
ggaatagtcaagaccgtcaagagcgccaagaaaatcatagaccgcaaggatcccgtaata
tgggatattctggaaaacgtcataaagggacaccccgttttgatgaaccgtgccccgacg
cttcaccgtctgggtattcaggcattccagcccaagctcatcgagggcaaggccatgcag
ctccacccgctggcatgtacggcgttcaacgccgacttcgacggcgaccagatggccgtt
cacttgccgctgggcaacgaagcgattttggaggcgcagatactgatgctcggttcacac
aacattctcaatcccgccaacggagcgcctatcaccgtgccttcgcaggacatggtgctc
ggtctgtactacatcaccaagccgagagccggagccaagggcgaaggattcgtgttctac
ggtcccgaggaggcgattatcgcctacaacgagggcagggctgacctgcacgccaccgtc
aaggtcatggtggacgacatcgacaaggacggcaatccggtgcgcgaactcaaagagacc
actatcggaagaatcatattcaaccaagtggttcccaaggaggtaggctatataaacgag
ctgctgaccaagaagtctctgagagacatcatcagcgtcgtgatgaaaaaggccggtgcc
gacaaggcggccaacttcttggacgacatcaagaacctcggataccagatggcattccgc
ggcggtttgtcgttcaacctcgatgctgtgctcattccggaggagaaagccgcactcgtt
cagcgcggatacgaaagcgtggacgaggtgatggcaaactacaacgccggtcttatctcg
aacaacgagcgatacaatcaggtcatcgatatatggactacggtcaataacgaccttacc
aagattctgaaaaatcaccttatagccgaccagcagggattcaaccccgtgtacatgatg
ctcgactccggagcccgtggttccgaggcgcagattcgtcagctctcaggtatgcgtggt
cttatggccaagccgcagaagagcggcgccgagggcggtcaggttatcgagaacccgatt
ctgtcgaacttcaaggagggtctttcggtgctcgaatacttcatctccacgcacggtgcc
cgtaagggtcttgccgatacggcgcttaaaacggccgatgcgggttatctgaccagacgt
cttgtggacgttgctcaggatgtaatcatcaacgaggaggattgcggaaccctgcgcggt
gtgactgcgacggcaatcaagcgcaacgacaccgttgtacagacgctttacgaacgtata
ctcggacgcacggcggtgaacgacgtgtatcatcctctgacgggcgagactcatcgtcgc
tgccggcgatga
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