KEGG   Aspergillus puulaauensis: APUU_51079S
Entry
APUU_51079S       CDS       T08081                                 
Symbol
RPB9
Name
(RefSeq) DNA-directed RNA polymerase II core subunit rpb9
  KO
K03017  DNA-directed RNA polymerase II subunit RPB9
Organism
apuu  Aspergillus puulaauensis
Pathway
apuu03020  RNA polymerase
apuu03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:apuu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    APUU_51079S (RPB9)
  09124 Replication and repair
   03420 Nucleotide excision repair
    APUU_51079S (RPB9)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:apuu03021]
    APUU_51079S (RPB9)
   03400 DNA repair and recombination proteins [BR:apuu03400]
    APUU_51079S (RPB9)
Transcription machinery [BR:apuu03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     APUU_51079S (RPB9)
DNA repair and recombination proteins [BR:apuu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      APUU_51079S (RPB9)
SSDB
Motif
Pfam: Zn_ribbon_TFIIS Zn_ribbon_RPB9 GFA
Other DBs
NCBI-GeneID: 64976373
NCBI-ProteinID: XP_041558562
LinkDB
Position
5:join(2818037..2818116,2818172..2818343,2818505..2818594,2818652..2818696)
AA seq 128 aa
MSASPSPSASGDSKQSDQIHFKFCRECSNLLYPKEDRINNRLMFTCRTCHVGEPATSYCV
YQNKLSSQVGDTAGVTQDVGNDPTLPRSNKLCPSCGEAEAVFFQSQQRSAETGMKLYFVC
CACGNVFV
NT seq 387 nt   +upstreamnt  +downstreamnt
atgtctgccagcccatctccatccgctagtggcgatagcaagcagagcgatcagattcat
ttcaagttctgccgcgaatgctccaacttgctctacccgaaagaggaccgcatcaacaat
cgcttaatgttcacatgccgaacctgccatgtcggcgagcctgcgacttcatattgtgtt
taccaaaataagctcagcagccaagttggcgatactgctggtgtgactcaggacgttgga
aatgaccctacgcttccccgatccaacaagctctgcccgagctgcggtgaagctgaagcc
gtgttcttccagtctcaacagcgatccgcggagacaggaatgaaactttactttgtttgc
tgcgcgtgtggaaacgttttcgtataa

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