Lancefieldella parvula: Apar_0074
Help
Entry
Apar_0074 CDS
T00983
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
apv
Lancefieldella parvula
Pathway
apv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Apar_0074
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apv03019
]
Apar_0074
Enzymes [BR:
apv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Apar_0074
Messenger RNA biogenesis [BR:
apv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Apar_0074
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Helicase_C_2
HEM4
UTP25_NTPase-like
CMS1
OapA_N
Motif
Other DBs
NCBI-ProteinID:
ACV50510
UniProt:
C8W8S2
LinkDB
All DBs
Position
complement(83810..85162)
Genome browser
AA seq
450 aa
AA seq
DB search
MEITFAELGLNEQILAGVTTLGFSVPTPVQTAAIPAVLAGKDVVASAQTGTGKTAAFMLP
TLQRIAVEKHDKAEKPDGKRNAAAERNAVAERNAKRGTGKRNAYPRALIVTPTRELAAQI
DNVAKSVCASTGQQAVIVTGGAHYKHQIAALQKGCDVLVATPGRLIDLLDKKHTSLEDIQ
VLVLDEADRMLDMGFWPSVHRIMEQLPKAHQTLLFSATLPASITSTIDALLKDPERIEIA
RTGQTAATIEQHLCSVTQGQKPQLLKALIDSFDPAPERVLVFCRTKSRVDSIYKNLKAAG
LKVDVMHADRPQKARAKALDRFRSASIQILVATDVMSRGIDIQGIDVVINFDVPLDPEDY
VHRIGRTGRAGATGQAYTFMGPDEVTPLREIEYFTKALVPAWDLPGFGYETGRIILQASR
STSKTTRSMFSGSRARGRNFGFSGRYGRHT
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atggaaataacttttgccgagctcgggctaaacgagcaaattttagcgggcgttacaacg
cttgggtttagcgtgcccactcccgttcaaactgcagcaattcctgctgtcctggcgggt
aaggatgttgttgcatctgctcaaacaggaacgggcaaaactgcagcgtttatgttgcct
acgctgcagcgtattgctgtcgagaaacacgacaaagccgagaaacctgacggcaaacgc
aatgcagccgccgagcgcaacgcagtcgccgagcgcaacgccaaacgcggcaccggcaaa
cgcaacgcgtatcctcgtgcgctcatcgttacaccgacgagagaacttgcagcccaaatt
gacaacgttgccaaaagcgtttgcgcatccactggtcagcaagccgtcattgtcacaggt
ggcgctcactacaaacaccagatagccgcgctgcaaaaaggttgcgacgtgctggtggca
acacccggccgtttgattgatcttctcgacaagaagcatacaagcctagaggacatccag
gtgctggtactcgatgaagcagaccgtatgcttgacatgggcttttggccaagcgtgcac
cgcattatggaacagcttcccaaggcacatcaaacgttgctcttctcggcaacgctcccc
gcgtcaattacgtcaaccatagatgcgctgctcaaagacccagagcgtatcgagattgca
agaaccggacaaactgcagcaacaatcgagcaacatttgtgctcagttacccagggacaa
aaaccgcagctcttgaaggcacttatcgactcgtttgatcctgcgccagagcgcgttttg
gtcttttgcaggacaaagtcgcgcgttgatagcatttataaaaacctcaaagctgcaggt
ctgaaagttgatgttatgcatgcggaccgtccgcaaaaagctcgcgcaaaagctttagat
cgattccgcagcgcctctattcaaattcttgttgcaaccgacgtcatgagccgcggcatt
gatatccagggcattgacgtcgtcattaactttgacgtacctcttgaccccgaggattac
gttcaccgcattggccgaacgggccgtgccggagccacaggtcaggcctatacgttcatg
ggaccagacgaggttacgccgcttagagagattgagtacttcacaaaagcgttagttcct
gcatgggatctacctggctttgggtatgaaacaggacgtattattttgcaggcgtctcgt
tctacttccaaaactactcgttccatgttttctggctcaagagcacgcggaagaaacttt
ggttttagcggaagatatggacgccacacataa
DBGET
integrated database retrieval system
