Lancefieldella parvula: Apar_0124
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Entry
Apar_0124 CDS
T00983
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
apv
Lancefieldella parvula
Pathway
apv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
apv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Apar_0124
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
apv03400
]
Apar_0124
Enzymes [BR:
apv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Apar_0124
DNA repair and recombination proteins [BR:
apv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Apar_0124
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
TRCF
ResIII
Cas3-like_C_2
AAA_22
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ACV50560
UniProt:
C8W8X2
LinkDB
All DBs
Position
138305..141748
Genome browser
AA seq
1147 aa
AA seq
DB search
MFINRVAAQLLSAPELEKLKRELSCGSDATLSLSQSARPLMLAALWSQNPRPCLLVVAGE
DAADRTARSLAAWLGNDAVLRYPNRKDYPWSDATPDDAIIGARCRAIAKLSAGEKVIVVA
SAHALMRRVPPVGSGYFLPATFTVGDDVPFEDVASLLVGMGYADTGEVDAPGTFHIHGDT
VDIFPAQATSPVRIEFFGDEIDRIRRMVAATGQTIGAIDEVTVAPARELAFTKEAIRRAE
EALYTRAQENSAIAADLELIQRGAQAPALERYLPVLYGGTASPLEHISSETLVVLAEPRS
LFDDCQRAFDEISSSAAASKVKLDGLYTDPKAMDFGSQQRLSFSSLLRTGAAVTSELSVV
QPSIAGSDTKLLGRVRQLVQDRDAVVFAVPDRAAREHLKLLFSDESIPFEESLGTSLENE
PDQNGVYVPLKRGRVTFTDAPVPAGIIIPTANLSVLSVSDLTARSARNKKRSKRIDPTTV
TFPFKPGDYVVHATHGIAHFTAIVRQEVAGRERDYFLLEYANDDKLYVPLEQVDRITRYV
GPDGNNPRLTRLNTADWSRATNKARKSAKKLAFDLVDLYTRRASVPGYAFSLDTPAQEEM
ESSFPYQLTPDQESAVADIKLDMEARKPMDRLLCGDVGFGKTEVALRAAFKACQDARQVM
ILCPTTILAQQHYETFFSRFAPFDLKVSVLSRFVTPAQQRKALEGFADGTIDVLVGTHRL
LSADVNPHDLGLVIIDEEQRFGVQHKEQLKNMREQVDVLTLSATPIPRTMQMAMSGVRDM
SLILTPPPGRKPVQVTVGEYNPDLVSAAIRSELEREGQVYYVSNRVTTIDEAVARVEEAA
PEARVGVAHGQMSAREVENVMLAFQEHEIDVLVATTIIESGIDNSHTNTLIIEDSQRLGL
AQLYQLKGRVGRGRQQAYAYFMFPAELPLTEEATERLTAINEFQDLGSGMRIAMRDLEIR
GAGSLMGAEQHGNLSSVGFDLFTQMLGEAVAEARGESAELEQTEVTINLPADFFLDEDYL
PEVDRRVLVYRRLAAATELSDIDALQQDTENSFGALPLAGKNLFDRARVRIRAQRLGATS
VSLTNGRLVYLGVEIPREQALKLKGRGAIVYPKSHKLAYPFHRNEEQLMPAALGVLEELG
GDDEVEE
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
gtgtttattaacagagttgcagctcaattactgagtgcacccgagttagagaagctgaag
cgggagctttcatgtggatcagatgccacactgtccctctcgcaaagcgctcgtccgcta
atgttggccgcgctctggtcgcagaaccctcgtccctgcttgttggttgttgcgggagag
gacgccgcagatcgtacagcacgttcgcttgctgcgtggctgggtaacgacgctgtgtta
cgttatcccaaccgtaaggattatccctggtcagatgccactccagatgacgccatcatt
ggagctaggtgtcgcgctatcgccaagctttccgctggcgagaaggtcattgtagttgca
agtgcccatgcgctgatgcgcagagttccccctgttggttcaggctattttcttcctgca
acgtttactgttggcgacgacgttccttttgaggacgtagcctcactgcttgtgggcatg
ggatacgctgatacgggcgaggtagatgcgccaggcaccttccacattcacggcgatacg
gttgatatcttcccagctcaagctacaagtcctgtacgcattgagttcttcggagacgag
attgatcgcatcaggcgcatggtggcagctaccggtcagaccattggtgccattgatgag
gtcaccgttgccccagctagagagcttgcatttactaaagaggctattcgtcgtgcagag
gaagcactttatacgcgtgcacaagaaaactctgcaattgctgctgacctggaacttatt
cagcgcggagctcaggctcctgcgcttgagcgttatttgcctgtgctgtatggaggcact
gccagcccgcttgagcatatttcttcagaaacattggtagttcttgcagagcctcgttcg
ttgtttgatgactgccagcgtgcctttgacgagatttcttcatctgcagcagcatcaaaa
gtgaaactagatggcctgtatacagatccaaaggctatggactttggctcgcagcaacgc
ctgtctttctcgtcacttttacgcacgggtgctgcggtaacgtcggagctttctgtggta
cagccgtctattgcgggatcagacacaaagcttttgggtcgcgtgaggcagctggtgcaa
gaccgcgacgcggtggtgtttgcggttccagatcgcgcagctcgtgagcatcttaagttg
cttttctcggacgagtccattccgtttgaggagtcgttaggaacgtcgcttgaaaatgaa
ccagaccaaaacggtgtctatgtgccacttaagcgaggtcgtgtcacatttaccgacgca
cccgttcctgcaggaatcatcattccaacagccaatctatcagtgctttctgtctcagat
ctgacggcaaggagcgctcgcaataagaagcgttccaagcgcattgaccccacaacagtg
acgttcccgtttaagccgggcgattacgttgttcatgcaacgcatggtattgcacacttt
acggccattgtgcgccaagaagtcgcaggtagagaacgtgattattttcttcttgaatac
gccaatgacgataaactctatgtgcctctggagcaagttgaccgcattacgcgctatgtg
ggacctgacggtaacaatccgcgcttgaccaggcttaacacggcagattggtcgcgtgct
actaacaaggcaagaaagtctgccaaaaagttggcatttgacctggtagacctctacaca
cgtcgcgcttcggtgccgggttatgcgttctcactggatactcctgctcaggaagagatg
gagtctagttttccgtatcagttaacgccagaccaagaaagtgctgttgcagacattaag
ctggacatggaagcgcgtaagcctatggatcgattgctttgcggtgacgtgggctttgga
aagacagaggtggcgcttcgagctgcgtttaaggcgtgtcaggatgctcgtcaggtcatg
attttgtgcccaacaactattttggcgcagcagcactacgagacgttcttctcgcgattt
gctccgtttgatttgaaggtaagtgtactttcgcgttttgttacacctgctcagcagcga
aaggcgcttgagggatttgcagacggaaccatagatgtgctggtaggaacacacagactg
ctctccgcagacgtaaatcctcacgacttgggtcttgttattatcgacgaggagcagcgc
tttggtgtgcagcacaaagagcaactcaagaacatgcgcgagcaggtagacgtgctgacg
ctttcggcaacacctattccgcgtactatgcagatggccatgagtggtgtgcgcgacatg
agcctgattctgacgccgccgcctggtagaaagcctgttcaggtgacggttggcgagtac
aacccagatcttgtttccgcagcaattagaagtgagctggagcgagaaggtcaggtgtac
tacgtgtccaatcgcgtgactactattgatgaggcggtggctcgcgtagaagaggctgca
ccagaggctcgcgtgggcgtggctcacggccaaatgagcgctcgcgaggtagaaaacgtc
atgcttgccttccaggagcacgagattgatgttttggtagccacaaccatcatcgagtcc
ggtattgataactcgcataccaacacgttgattatcgaggactcacaacgtctgggattg
gctcagttgtaccagcttaaaggtcgtgttggccgtggtagacaacaggcgtacgcgtac
ttcatgttcccggcagagctgccgttgactgaagaggcaaccgagcgtctgactgcaatc
aacgagttccaggatttgggtagcggcatgcgtattgccatgcgcgatctggagattaga
ggtgccggctctcttatgggcgctgagcaacacggaaatctttccagtgttggctttgat
ctctttacacagatgctgggcgaggcggttgctgaggctcgtggtgagtctgcagagtta
gagcagactgaagtaactatcaatctgcctgcagatttcttccttgatgaggactatctg
ccagaagttgaccgacgtgttttggtgtatcgtcgtcttgccgcagctacagagctttcc
gatatagacgctcttcagcaagataccgagaatagctttggagccctgcctcttgcgggt
aagaacttgtttgatcgtgctcgtgtgcgcattcgtgcgcagcgtttgggcgcaacgtca
gtaagcctaacaaatggacgactggtatatttgggtgtagaaattcctcgcgaacaagcc
cttaagttgaagggtcgcggtgctattgtgtatccaaagtcgcataagctggcatatccg
ttccaccgaaatgaagagcagctgatgcccgccgccctaggagttcttgaagaacttggc
ggcgacgacgaggttgaggagtaa
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