Acetobacter pasteurianus IFO 3283-01-42C: APA42C_01230
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Entry
APA42C_01230 CDS
T01818
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
apw
Acetobacter pasteurianus IFO 3283-01-42C
Brite
KEGG Orthology (KO) [BR:
apw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
apw03016
]
APA42C_01230
Enzymes [BR:
apw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
APA42C_01230
Transfer RNA biogenesis [BR:
apw03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
APA42C_01230
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Trp_repressor
Motif
Other DBs
NCBI-ProteinID:
BAI16566
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All DBs
Position
132092..133300
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AA seq
402 aa
AA seq
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MARSATPEFPPARLISSTQELEAALAPFHNESFVTVDTEFMREQTYWPELCLVQIGATND
VVLIDALADGIDLTPLKNLFVDTAVLKVFHAARQDLEIFLHLFDALPTPLFDTQVAAMVA
GFGDQVGYDSLVGSLTGHMIDKSHRFTDWSVRPLSPAQLTYAAGDVTWLRLVYERLVKKL
EQEQRLDWVAAEMAELEDPATFRPDPEKQWERLRARTNNRRMLAVLRAIAALREREAQRV
NVPRQRLVKDESLLEIAATTPATTEALTRVRGVSRGLAEGRTGQALLQAIKQAQSLPDSE
LPRSPRSKSKDTPRPSASLVALLKVLLTSCCEKHDVAPRLVASADDLDALALDPSQPHAV
LAGWRRKVFGETAQALCEGKIALCVKSGRVVAIPQNTDVASA
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atggccagatcagcaacccctgaattccctcccgcgcgtcttatttcctctactcaggag
ttagaggcggctcttgcaccctttcataacgaaagcttcgtaacggttgatacggagttt
atgcgggagcaaacatactggccggaactctgcctggttcagattggcgcgaccaatgat
gtcgtgctgatagatgcgctggcagacggtattgatcttactccgctaaaaaatcttttt
gtggatacggctgtgctcaaggtgtttcacgctgcccggcaggatctggaaatttttctg
cacctgtttgatgccttgccgactcccctttttgatacgcaagttgcagcgatggttgct
gggtttggggatcaggttgggtatgacagcctagttggttccttaaccggacatatgatt
gataaaagccatcgctttacagattggtctgtgcggccattgtctcctgcccaactgaca
tatgctgcgggcgatgtaacgtggttgcggcttgtttatgagcgtcttgttaaaaagctg
gagcaggaacagcgtttggattgggttgcggctgaaatggccgaattggaagaccctgcc
acatttcgcccggacccggaaaaacagtgggaacgtttgcgcgcacgcaccaacaaccgg
cgtatgcttgctgttttgcgtgccattgctgccttacgtgagcgtgaagcccagcgcgtg
aatgttccgcgccaacgactggtgaaagacgaaagcctgctggaaattgcggcaacgact
ccagctacaaccgaagctttaacccgtgtgcgtggtgtttctcgtgggttggcagaaggg
cgtacggggcaggccttgttgcaggctattaaacaggcacagtctttgccggattcggaa
ctaccacgttccccccgcagcaagagcaaagatacaccaaggccttcagcatcgctggtg
gcattgttgaaggtgcttttaacatcttgctgtgaaaagcatgatgttgccccgcgcttg
gtggcatctgcagatgatctggatgccttggcgcttgatccttctcagcctcatgctgtg
ctagctggatggcggcgcaaggtgtttggtgaaacagcacaggctttgtgcgaagggaaa
atagctctttgcgtaaagtctggccgcgttgtggctattccgcagaatacggatgtagct
tctgcttaa
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