Acetobacter pasteurianus IFO 3283-01-42C: APA42C_06390
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Entry
APA42C_06390 CDS
T01818
Symbol
rhlE
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
apw
Acetobacter pasteurianus IFO 3283-01-42C
Pathway
apw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
apw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
APA42C_06390 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
apw03019
]
APA42C_06390 (rhlE)
Enzymes [BR:
apw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
APA42C_06390 (rhlE)
Messenger RNA biogenesis [BR:
apw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
APA42C_06390 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
AAA_22
AAA_11
Flavi_DEAD
CMS1
Motif
Other DBs
NCBI-ProteinID:
BAI17076
LinkDB
All DBs
Position
665114..666451
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AA seq
445 aa
AA seq
DB search
MTKFSDLALAPPLLKALAEQGYDTPTPIQERSIPYLLQGRDLLGLAQTGTGKTASFALPI
LEHLIKNPRANTPKQPRVLVLAPTRELVAQISDSFKAYARHMKFTQAVVFGGVGQGRQVE
AMRRGVDVLVAAPGRLLDLMGQGFIDLSGLEILVLDEADRMLDMGFVRDIRRIMTFVPEQ
RQTLLFSATMPRSIEDLAASLLNDPARVEVAPPSSTVDRIQQAVMFVNGAGDKRDALLNM
VESPKVSRAVVFTLMKHEANKVAEFLNKNNVVAEAIHGNKSQGARERAMKGFRSGSVKVL
VATDIAARGIDVDDVSHVFNYDLPNVPESYVHRIGRTARAGRDGWAVSFCDAEQRAWLRD
IERTIGKTVPVVRDHPWHSAEAEASTMRPPVLGGGGRGRGGPRGGGAPRGGAPRGGAPGG
GRGGPRRSGGGARSGGRSGAPAGRM
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgaccaaattttccgatctagcacttgctccaccactgctgaaggcactggcagagcag
ggttatgatacacccactcctattcaggaacgttccatcccctatctgttgcaggggcgt
gatctgctgggtctggcccagacaggtacaggcaaaaccgcatcttttgcgctgcctatt
ctggaacatctgatcaaaaatccacgtgcaaacacgcccaaacagccgcgtgttctggtg
ctggcccccacgcgtgaacttgtggcccagattagcgatagctttaaggcttacgcccgc
cacatgaagtttacgcaggccgttgtgttcggcggtgtagggcagggcaggcaggttgaa
gccatgcgccgtggcgtggatgtgcttgtggctgcaccgggccgtctgcttgatctgatg
ggtcagggatttattgatctgtccggtctggaaattctggtgctggacgaagccgaccgc
atgctggacatgggttttgtgcgcgatatccgccgcatcatgacctttgtgccagagcag
cgtcagacgcttctgttctctgccaccatgccgcgcagcattgaagatctggcagcatct
ttgctcaatgatccggcacgcgttgaagtggcaccgccttccagcacggtagatcgtatt
cagcaggctgttatgttcgtaaatggcgcgggcgataagcgcgatgcgctgctgaacatg
gtggaatctcccaaggtttcccgcgctgtggtgttcacgcttatgaagcatgaagccaac
aaggttgcggaatttctgaacaagaacaacgtggtggcagaggccattcacggcaacaag
tctcagggtgcgcgtgagcgggccatgaagggcttccgctctggttccgttaaagtgctg
gtggcaacggatattgccgcccgcggtattgatgtggacgacgtaagccacgtgttcaat
tacgatctgccaaatgtgccggaaagctacgtgcaccgcattggtcgtacagcacgtgcg
gggcgtgatggctgggctgtttccttctgcgatgcagaacagcgggcttggctgcgtgat
attgaacgcaccattggcaagactgtgccggtggttcgggatcatccgtggcactcggct
gaggccgaagcttccaccatgcgtccgcctgttctgggtggcggtggccgtggccgtggt
ggcccgcgcggcggtggtgctccacgtggtggcgcacctcgtgggggtgctcccggtggt
ggtcgtggtggcccgcgccgttctggtggtggtgctcgcagcggtggccgttccggtgca
cctgctggccgcatgtaa
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