Acetobacter pasteurianus IFO 3283-01-42C: APA42C_41760
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Entry
APA42C_41760 CDS
T01818
Symbol
recD_traA
Name
(GenBank) DNA helicase RecD/TraA
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
apw
Acetobacter pasteurianus IFO 3283-01-42C
Pathway
apw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
apw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
APA42C_41760 (recD_traA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
apw03400
]
APA42C_41760 (recD_traA)
Enzymes [BR:
apw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
APA42C_41760 (recD_traA)
DNA repair and recombination proteins [BR:
apw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
APA42C_41760 (recD_traA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
OB_YrrC
SH3_13
UvrD_C_2
HHH_5
Viral_helicase1
AAA_11
HHH_2
NAT10_TcmA_helicase
PIF1
nSTAND3
TraI_hel_assoc_N
MeaB
NTPase_1
RsgA_GTPase
AAA_16
AAA_29
DEAD
NPHP3_N
SLFN-g3_helicase
AAA_22
ABC_tran
UvrD-helicase
AAA_28
ATP_bind_1
T2SSE
IstB_IS21
AAA
ABC_ATPase
AAA_23
NACHT
MMR_HSR1
TsaE
cobW
NB-ARC
TrwB_AAD_bind
MobB
Motif
Other DBs
NCBI-ProteinID:
BAI19184
LinkDB
All DBs
Position
pAPA42C_011:complement(184771..186990)
Genome browser
AA seq
739 aa
AA seq
DB search
MTSAVVGEQCQTEALAGLVERVTFHNAENGFCVLRVKVRGQRDLVTVVGHAAMISAGEFV
QMSGRWFNDHTHGLQFKAEFLKASPPTTVEGIERYLGSGMIRGIGPVYAKKLVKAFGEAV
FDLIEQEPHRLREVTGIGPKRAERIVGGWADQKVIREIMLFLHSNGVGTSRAVRIFKTYG
QDAVRLISENPYRLAKDIRGIGFKTADQIARKMGIAPDAMIRVRAGISYALGEAMDEGHC
GLPVGELLTSTAELLEVAAPLIETALALELEAGDVVADSVGETSCIFLAGLYRAEQSIAE
RLRACAVGRPPWPEIDAEKAMTWVEGKTGLAMAPSQQEAVRLALRSKVLVITGGPGVGKT
TLVNAILKIVTAKGTDVQLCAPTGRAAKRLSESTGLEGKTIHRLLETDPGNGSFKRDDTN
PLTCDLLVVDEASMVDVLLMRSLLRALPDSASLLIVGDVDQLPSVGPGQVLADIIGSDAV
PVVRLTEVFRQAAQSRIITNAHRINEGKMPELSAEEGSDFYFVEAAEPEVGLRKLLAVVK
DRIPARFGLDPVRDVQVLCPMNRGGLGARSLNIELQQALNPAGDVKVERFGWTYGPGDKV
MQIANDYDRDVFNGDLGVIDKIDVEEGELTVLFDGREVVYGFGELDELVLAYATTIHKSQ
GSEYPVVVIPLVTQHYTMLARNLLYTGVTRGRKLVVLVGQKKALAIAVRNQGGRLRWSKL
RDWLVGTSGTGHLSRLKKP
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atgaccagtgccgtggttggagaacaatgccaaacggaagcgctggccggcctcgtggag
cgggtgacgttccacaatgccgagaacggtttctgcgtcctgcgggtgaaggtgcggggg
cagcgcgatctggtcactgtcgtcggccatgccgccatgatctcggcgggtgagttcgtg
cagatgtcggggcgctggttcaacgaccacacccacggcttgcagttcaaggcggagttc
ctcaaggccagtccgccgaccacggtcgaaggcatagagcgctatctcggctcgggcatg
atccggggcattggtcccgtctatgccaaaaaactggtgaaagcgttcggcgaggccgtg
ttcgacctgatcgagcaggaaccgcatcgcctgcgggaagtgacaggcattggtcccaag
cgggccgaacggattgtcggtggctgggcagaccagaaggtgatccgcgagatcatgctg
ttcctgcacagcaacggcgtcggcacgtcgcgggcggtacggatcttcaagacctacggg
caggatgcggtcagactgatcagcgagaacccctatcggttggcgaaggacatccggggc
atcggcttcaaaaccgccgaccagatcgcccggaagatggggatcgcgcctgatgccatg
atccgggtgagggccgggatctcctatgcccttggtgaggcgatggatgaagggcattgc
ggcctcccggtcggtgaactcctgaccagcaccgccgaactgctggaggtcgccgcccct
ctgatcgaaacagccctcgcgctggagctggaagcgggagacgtggtcgctgatagcgtg
ggagagacgagttgcattttcttggctggtctctatcgcgcggagcagagcatcgccgag
cgattgcgcgcctgcgccgtgggtcggccgccctggccggagatcgatgctgaaaaggcc
atgacttgggtggaaggcaagaccggacttgccatggcgcccagccagcaggaagcggtg
cgccttgcactgcgtagcaaggtgctggtgatcacgggtggtcctggcgtgggcaagacc
acgctggtcaacgccattctgaagatcgtgactgccaagggcacagacgtgcaactttgc
gcgccgaccggccgggcggcgaagcgcctgtcggaaagcacggggctggaaggcaagacc
atccatagactgctggagacggatccgggcaatggcagtttcaaacgggacgataccaac
ccgctgacctgcgacctgctggttgtggacgaggccagcatggtcgacgtgctgctgatg
cgctccctgctgcgcgcgttacctgacagcgcgtctctgctgatcgtcggcgacgtggac
cagttgccttctgtcggaccggggcaggtgctggccgatatcattggctccgatgctgtc
cctgtggtgcgcctgaccgaggtgttccgccaggcggcacagagccggatcatcaccaac
gcgcaccggatcaacgaagggaagatgccggagctgagcgcggaagagggatcggatttc
tatttcgtggaggcggctgagcccgaggtcggactgcgcaagttgctggccgtggtgaag
gaccgcatcccggcgcggttcgggctggacccggtccgcgacgtgcaggtgctctgcccg
atgaaccgaggtgggctgggcgcacggtcgctgaatatcgagttgcagcaggcgctgaac
ccggcaggcgacgtgaaggtcgagcggttcggctggacctacggtcccggcgacaaggtg
atgcagatcgccaacgattatgaccgggacgtcttcaacggggatctcggcgttatcgac
aagatcgatgtggaagagggcgaactgacggtcttattcgatggacgggaggtcgtttac
ggcttcggcgagttggacgaactggtgctggcctacgcgacgaccattcacaagagccag
ggctcggaatatccggtagtggtcatcccgctggtgacgcagcattatacgatgctggcg
cggaacctgctttataccggtgttacacgggggcggaagctcgtcgtgctggtcgggcag
aagaaggctctggccatagctgtgcgaaatcagggcggaaggctacgttggtcaaaactg
agagactggctggtgggtacgtcaggtacaggtcatctatcccgcctaaagaaaccttaa
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