Aquimarina sp. AD1: D1815_08115
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Entry
D1815_08115 CDS
T05625
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
aqa
Aquimarina sp. AD1
Brite
KEGG Orthology (KO) [BR:
aqa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
aqa03009
]
D1815_08115 (rlmD)
Enzymes [BR:
aqa01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
D1815_08115 (rlmD)
Ribosome biogenesis [BR:
aqa03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
D1815_08115 (rlmD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRM5-TYW2_MTfase
MTS
Methyltransf_15
Cons_hypoth95
Methyltransf_11
PCMT
TRAM
Methyltransf_ANTKMT
PrmA
N6_N4_Mtase
Methyltransf_2
FtsJ
Methyltransf_37
Methyltransf_12
UPF0020
Methyltransf_4
Motif
Other DBs
NCBI-ProteinID:
AXT55715
LinkDB
All DBs
Position
1795134..1796546
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AA seq
470 aa
AA seq
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MARKNKRQVFENIEVIDAGAKGKSIAKAPDGKIIFLNNAVPGDVVDIQTTKKRKAFYEGT
ATTFHKKSDKRVQPLCSHFGTCGGCKWQFMGYEHQLNYKEQEVINNLTRLGKIELPEVTP
ILGSEDQFLYRNKMEFSFSDSRWLTLDEIQSDTEIKNRNALGFHIPGMWDKILDIDKCHL
QEDPSNAIRNKIKTFATENDLSFYNARKQSGFLRTLMMRIVSTGEIMVLVQFFHEDVEKR
TLLLDYIVSEFPEITSLQYVINSKGNDTIYDQKVICYHGKDHIEEEMEGLRFKINAKSFY
QTNSKQAYELYKVTRDFAGLTGNELVYDLYTGTGTIAQFVAKKAKKVIGVEAVPEAIADA
KENAKHNNIDNVEFYVGDMKKVFTSDFIATHGQPEVVITDPPRDGMHKDVVGQLLNISPN
KIVYVSCNSATQARDLSLLDSAYKVTKVQPVDMFPQTHHVENVVLLEKRS
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atggcaagaaagaataaaaggcaagtttttgaaaatatagaagtgattgatgctggtgca
aaaggaaaaagtattgctaaagctcctgatggaaaaatcatatttctaaataacgcagta
cctggagatgttgtggatattcaaaccactaaaaaacgaaaagctttttatgaaggaacg
gcaactacttttcataaaaaatctgacaaacgtgtccaacctctttgttctcattttggt
acttgtggtgggtgtaaatggcagtttatggggtacgagcatcaactaaactataaagag
caggaagttataaataacctaactagattaggaaaaattgagttaccagaagtaactcca
atactaggttctgaagatcaattcctttacagaaataaaatggagttttcttttagtgat
agtcgttggttaacattagatgaaatccaaagtgacacagaaattaaaaatagaaatgct
ctagggtttcacatccctggaatgtgggataaaattttggatatagacaaatgtcattta
caagaggatcctagtaatgctattcgaaataaaataaaaacatttgctacagaaaatgat
ttatcattttataatgcgagaaagcaaagtggtttccttcgcactcttatgatgagaatt
gtatctaccggagaaattatggtgttagttcaattttttcatgaagatgtagaaaaacga
accttattattagattacatagtttctgaatttccagaaattacatcattacaatatgta
attaactctaaaggaaatgatacaatttatgaccagaaagtaatctgttatcacggaaaa
gatcatatcgaagaagaaatggaaggtttacgttttaaaattaacgcgaaatctttctat
cagaccaactccaagcaagcttatgaattgtataaagtaacacgagatttcgctggtcta
acgggaaatgaattagtatatgatttatatacaggaacgggtactattgctcaatttgta
gcaaaaaaggcaaaaaaagtaattggtgtagaagctgtgccagaagctattgctgatgca
aaagaaaatgctaagcataataatatcgataacgtagaattttacgtaggagatatgaaa
aaagtatttacttcggattttatagctactcatggacaaccagaagttgtaattactgat
ccaccaagagatggaatgcataaggatgtggtaggacagttacttaacatttctcccaat
aagattgtgtatgttagttgtaacagtgcaacacaagctagagatttgtcgttattagat
agtgcatataaggttactaaagtgcaacctgtagatatgtttccacaaacacaccatgta
gaaaatgtggtactacttgaaaagagaagttaa
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