Aquimarina sp. AD1: D1815_12970
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Entry
D1815_12970 CDS
T05625
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
aqa
Aquimarina sp. AD1
Brite
KEGG Orthology (KO) [BR:
aqa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
aqa03016
]
D1815_12970
Enzymes [BR:
aqa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
D1815_12970
Transfer RNA biogenesis [BR:
aqa03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
D1815_12970
Prokaryotic type
tRNA splicing ligases
D1815_12970
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
IRK_N
Motif
Other DBs
NCBI-ProteinID:
AXT56629
LinkDB
All DBs
Position
2960136..2961527
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AA seq
463 aa
AA seq
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MGKKLSGKDLIKLGFPKNNSINVTLGQINRYQKRVKKEHILIEAKKVLLNPEAYQGDGVW
GKIAESLLKPVEVKKHALKTTRSPFQIYGENEIDEQAKYQLYDALKLPVAVAGALMPDAH
SGYGLPIGGVLATKNAVIPYGVGVDIGCRMCLTIYPIAISYLKGKKHQLENILSEHTKFG
MYETHKIKHDHEIFEREEFKNIPLVKRLKDKAYKQLGTSGGGNHFVEFGTVAITDTENEW
GLDVGTYIGVLSHSGSRGLGANIAKHYTYLATKQCPLPKHVQQLAWLDLNTHDGQEYWLA
MNLAGDYAQACHDDIHARIGKLLGSRPVAKIENHHNFAWKQEVNGEECIVHRKGATPAAK
GELGIIPGSMTAPGFIVRGLGNPESLQSASHGAGRLHSRRKCKERFTKSDIKKELKANDV
TLIGGGIDEAPMAYKDITKVMANQQELVEVVGTFTPKIVRMDK
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgggaaagaaattaagcggaaaagacttaatcaaattaggctttccaaaaaacaatagt
attaatgtgacgttgggtcagattaatcgatatcaaaaaagagtaaaaaaagaacacata
ttaatagaagctaaaaaggtattattaaatccagaagcctatcaaggtgatggcgtatgg
ggcaagattgctgagagtttactaaagccagtggaagtaaaaaagcacgctttaaaaact
accagatcaccatttcagatttatggcgaaaatgaaatcgatgagcaagcaaaataccaa
ttgtatgatgcactcaagttaccagtagcagttgcgggagctttaatgccagatgcacat
agcggatatggtttgcctattggcggagtgcttgccacaaaaaatgccgtgattccatac
ggtgttggagtagatatcggatgtagaatgtgtctaacaatttatccgattgctatctcc
tatttaaaagggaaaaagcatcaattggaaaacatattgtctgagcataccaaattcggg
atgtatgaaacccataaaataaagcatgatcatgagatctttgaaagagaagagtttaag
aacatacctctagtaaaaagattgaaagacaaagcatataaacaattgggaacatctggt
ggtggtaatcattttgtagaatttggaactgtagctattacagatacagaaaatgaatgg
ggattggatgtaggtacatatataggtgtgctatcacatagtggttccagaggattggga
gccaatattgcaaaacactatacttatttagcaaccaaacaatgtccattgccaaaacac
gtacaacaattagcttggctagatctaaatacgcatgatggtcaggaatattggttagca
atgaatcttgctggagattatgcgcaagcatgtcacgatgatattcatgccagaatcgga
aaattattaggatcacgacctgttgcaaaaattgaaaatcatcacaattttgcttggaaa
caagaagtaaatggcgaggagtgcatcgtgcatagaaaaggagctactcctgctgcaaaa
ggtgagctaggaattattccgggatctatgacagctccaggatttatagtgagaggatta
gggaacccagaaagtttgcaatctgcatcacacggtgctggaagattacattctagaaga
aagtgtaaagagagatttaccaagagtgatatcaaaaaagaattgaaagcaaatgatgtt
acattaattggtggaggaattgatgaagcacctatggcgtacaaggatattactaaagta
atggcgaatcaacaagagttggttgaggtagttggaacatttacaccaaaaatcgtgcga
atggataagtaa
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