Aquimarina sp. BL5: D1818_08130
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Entry
D1818_08130 CDS
T05615
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
aqb
Aquimarina sp. BL5
Pathway
aqb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aqb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D1818_08130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aqb03019
]
D1818_08130
03400 DNA repair and recombination proteins [BR:
aqb03400
]
D1818_08130
Enzymes [BR:
aqb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D1818_08130
Messenger RNA biogenesis [BR:
aqb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D1818_08130
DNA repair and recombination proteins [BR:
aqb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
D1818_08130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
RQC
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HTH_40
HHH
Motif
Other DBs
NCBI-ProteinID:
AXT50799
LinkDB
All DBs
Position
complement(1886191..1888398)
Genome browser
AA seq
735 aa
AA seq
DB search
MSLNKTDLQGALKKYFGFSQFRGLQEKVIESILSNQNTFVIMPTGGGKSLCYQLPALMCE
GTAIVVSPLIALMKNQVDAIRSISSEEGIAHVLNSSLNKSEVKRVKEDIVNGVTKLLYVA
PESLTKEEYVDFLKEQKISFLAVDEAHCISEWGHDFRPEYRNLKNIIKRIGENIPIIGLT
ATATPKVQEDILKNLAMSNAKTFKASFNRPNLYYEIRPKTKNVDADIIRFVKQNSGKSGI
VYCLSRKRVEELAQTLEVNGVKAVPYHAGLDAKTRAKHQDMFLMEDADVVVATIAFGMGI
DKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAYYAYKDIEKLEKFMSGKPVAEQ
EIGHALLQEVVAFAETSISRRKFILHYFGEEFDDVTGDGADMDDNVRNPKKKHEAKDEVQ
LLLKVVSKTGEIYKSKDLVSTLIGKSNALIISHKTHEQPFFGTGKSREDKYWMALIRQVL
VAGYLKKDIETYGVIRITPKGREFIESPVSFMMTEDHVYNEAKDDSIITAAKSGGKAGGT
DDRLVGMLKDLRKSVAKKLGVPPFVVFQDPSLEDMALKYPVNIEELANVHGVGEGKAKKY
GKEFMALISKYVDENDIMRPDDFVVKSTGANSGLKLYIIQNVDRKLPLDDIAAAKGMDMT
EFIKEMEAIVYSGTKLNITYWIDEVLDEDQQEEIHEYFIEAENDKIDTAIEEFDGDYDDE
ELRLYRIKFISDVAN
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atgagtttgaacaaaaccgacttacaaggagctttaaaaaagtactttggttttagtcaa
tttagaggattgcaggaaaaggtaatagaaagtattttaagcaaccaaaatacttttgtt
attatgccaacaggtggtggaaaatccctttgctaccagctacctgccttaatgtgtgaa
ggaacagctattgtagtttctccgttaattgcactaatgaaaaatcaagtagatgctatt
cgaagtatttcttcagaagaaggaatagcccatgtattgaattcttcacttaataaatcc
gaggttaagagagtaaaagaagatatcgttaatggtgtgactaaactactttatgtagcg
ccagagtctttaactaaggaggaatatgtagatttcttaaaagaacaaaagatttctttt
ttggcagttgatgaagcccattgtatcagtgaatggggtcacgattttaggccagaatat
cgaaatctaaagaatattataaagagaataggagagaatatcccaatcattggacttacg
gcgacagctactccgaaagtgcaagaagatattcttaagaatttagcgatgagcaatgct
aaaacattcaaagcatcgtttaatcgtcctaatttatactacgaaattcgtcctaaaaca
aaaaatgtggatgcggatattatccgttttgtaaaacaaaatagcggaaaaagtggtatc
gtatattgtttaagtagaaaaagagtagaggaacttgctcagacgttagaagtaaatggt
gtaaaagcagttccctatcatgcaggactagatgcaaaaacgagagcaaaacatcaggat
atgttccttatggaagacgcggatgtggttgttgctactatagcttttggtatggggatc
gataaaccagatgtacgttttgtaattcatcatgatatacccaaaagtatagagagttac
tatcaggaaacgggacgtgctggtagagatggaggagaaggacattgtttagcatattat
gcatataaggatatcgaaaagctggaaaagtttatgagcggtaaacctgttgcagaacag
gaaataggccatgcgcttttgcaagaagtagtagcttttgcagaaacatcaatctccaga
cgtaaatttatattacattattttggggaagagtttgacgatgttaccggagatggcgcg
gatatggacgataacgttcgtaatccaaagaaaaaacacgaagcaaaagatgaggtacaa
ctgctactaaaggtggtgagtaaaactggagaaatttataagtccaaagatttagtaagt
acgctaatcggtaagagtaatgcattgattatttctcataagacccacgaacaaccattt
tttgggactggtaaatccagagaagataaatattggatggcactaatacgacaagtacta
gtggctggatacttaaaaaaagatatagaaacatacggtgtcattagaataactcctaaa
ggaagagagtttatcgaatcaccagttagttttatgatgacagaagatcatgtatataat
gaagctaaagatgattctattattaccgccgctaaatccgggggtaaagcaggaggaaca
gatgatcgattggtaggaatgctaaaagatttaagaaaaagtgtagcaaaaaaattaggt
gttccgccttttgttgtattccaagatccttctttagaggatatggcattaaaatatcca
gtaaacatagaagaacttgctaatgtacacggagtaggtgaaggtaaggctaagaaatac
ggaaaggaattcatggcacttatttctaagtatgtagatgaaaatgatatcatgcgtccg
gatgattttgttgtaaaaagcaccggggctaatagcggtcttaaattatatatcattcag
aacgtagatagaaaactaccattagatgatatcgctgcagctaaaggtatggatatgaca
gagtttattaaagagatggaagctatcgtgtatagtggaactaagcttaatattacgtac
tggattgatgaagtactagatgaagatcagcaagaagaaattcatgaatattttatagaa
gccgaaaacgataaaatagatactgctattgaagagtttgatggtgactatgatgatgaa
gaactaagactataccgaatcaagtttattagtgatgtagctaactag
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