Aquimarina sp. BL5: D1818_23600
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Entry
D1818_23600 CDS
T05615
Name
(GenBank) ATP-dependent helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
aqb
Aquimarina sp. BL5
Pathway
aqb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aqb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D1818_23600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aqb03019
]
D1818_23600
03009 Ribosome biogenesis [BR:
aqb03009
]
D1818_23600
Enzymes [BR:
aqb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
D1818_23600
Messenger RNA biogenesis [BR:
aqb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D1818_23600
Ribosome biogenesis [BR:
aqb03009
]
Prokaryotic type
rRNA helicases
D1818_23600
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AXT53664
UniProt:
A0A3A9VQF4
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All DBs
Position
complement(5625590..5627359)
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AA seq
589 aa
AA seq
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MNKFEALGLSEAIIKAVNEMGFETPSEVQEKAIPILLDNETDIVALAQTGTGKTAAFGFP
LIEKVDNESRITQGLILSPTRELCLQITNELKNYSKFSKGLRTVAIYGGASIHDQAKEIK
RGAQIIVATPGRMQDMINRKMVDISNIGYCVLDEADEMLNMGFYEDITAILSHTPEDKST
WLFSATMPREVSTIAKRFMHNPVEITVGHKNTGSKNVSHEYYVVNSRDRYAALKRLADAN
PDIFSVIFCRTKRDTQKVAESLIEDGYNAAALHGDLSQNQRDLVMKSFRNRQIQMLVATD
VAARGIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKNGVSMVIVSKSELRKIKTVERI
IKQKFEEKEIPSGEEICQVQLFHLANDIAKAEINHEIDNYLPSINEVLEDFTKEELIKKF
FSVEFSRFHNYYKKAKDLNAAGESRGDSRGGHGSTRYFINVGEKDGFDWMTLKDFLKETL
DLGRDAVSRVDVKESFSFFNTDSEHQDNILAIFEDFKLEGRKVNIEISKDSGRSRGGGRR
RRDSNGGGFKGKRRSEGFTPRGKGRRDNDSGGDRGGSGRRDRRKRSDRR
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaatttgaagcattaggcctcagcgaagccattattaaggctgtgaatgaaatg
gggttcgaaacccctagtgaagtacaggaaaaggcgatccctattttgcttgataacgaa
acggatattgttgcacttgcacaaaccggaactggaaagaccgcagcatttggttttcca
ctaattgaaaaagtagataacgaaagtagaattacgcaaggattgatattatctcctacg
cgtgaactttgtttacaaattaccaatgaactaaaaaattactccaagtttagtaaagga
ttacgaactgtagcgatctatggaggtgccagtattcatgatcaggcaaaagaaattaag
cgtggtgcacagattatagttgctacaccaggacgaatgcaggatatgattaaccgtaag
atggtagacatctctaatataggttattgtgttctagatgaagctgatgaaatgcttaat
atgggattctatgaggatattactgctatcttatcccacactccagaggacaaaagcacg
tggttattctctgcaactatgccaagagaagtttctactattgctaagcgttttatgcat
aatccagtagaaatcactgtaggtcataaaaataccggttccaagaacgtatctcatgaa
tattatgtagttaattcacgagatcgttatgccgctttaaaaagattagcagatgctaat
cctgatattttttctgtaatattttgccgtaccaaaagagacacccaaaaagttgcagaa
agtcttatcgaagatggatataatgctgccgctttacacggtgatcttagtcaaaatcag
agagatctggttatgaaaagttttagaaatcgtcagatccaaatgttagtagctacagat
gtagctgcacgtggtatcgatgttgatgatattactcacgtaattaattatcaattacct
gatgagattgaaacctatacacatagaagcggaagaacaggacgtgcaggaaaaaatggt
gtttctatggttattgtttctaagagtgaacttagaaaaataaagacggtagagcgaatt
attaaacagaagttcgaagaaaaagaaatcccaagtggagaagaaatatgtcaagttcaa
ttatttcatttagctaatgatattgcaaaagcggaaataaatcacgaaattgataattac
ctgccttctataaatgaagtattagaagattttactaaagaagagcttattaaaaagttt
ttttctgtagagttctctcgttttcataattattataaaaaagctaaagatcttaatgct
gctggagaaagtagaggggattctagaggaggtcacggaagtacacgttattttatcaac
gtgggtgaaaaagatggatttgattggatgactttaaaagacttccttaaagaaacatta
gatttaggaagagatgctgtgagtcgcgtggatgtaaaagaaagtttttctttctttaat
acagactcagaacatcaggacaatattctggcaatttttgaagatttcaagctagaagga
agaaaagtaaacatagaaatctctaaagattctggccgcagcagaggtggtggtagacgt
cgtagagatagtaatggaggtggttttaaaggaaaacgcagaagcgaaggctttacacct
agaggaaaaggccgtcgtgataatgatagtggtggtgatcgtggtggtagcggaagaaga
gaccgaagaaaacgtagtgatcgtagataa
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